Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq359 154 4e-32
seq116 122 2e-22
seq487 98.7 2e-15
>seq359
Length=494912
Score = 154 bits (170), Expect = 4e-32
Identities = 153/198 (77%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981
|||| | ||||| ||||||||||| ||||| || || ||||||||||| || ||| |
Sbjct 437761 TCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCG 437820
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || || || ||||| ||||| |||||||| || |||||||| || |||||||
Sbjct 437821 ATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGC 437880
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | |||||||| ||||| |||||||| ||||| | |||||| |||| || |||
Sbjct 437881 AACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACA 437940
Query 178102 TCCAAAAAGAATCAACAC 178119
| ||||| | | |||||
Sbjct 437941 TTCAAAAGGTACGAACAC 437958
>seq116
Length=121463
Score = 122 bits (134), Expect = 2e-22
Identities = 139/187 (74%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || || ||||| ||||| || || || || ||||| ||||||||
Sbjct 20523 TCACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACGTCAAGT 20464
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| || || || || || ||||| ||||| || ||||||||||| |
Sbjct 20463 CCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCA 20404
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| || ||||||||||| | || || |||| || ||| |||| || || || || || |
Sbjct 20403 AGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTC 20344
Query 178123 ATCTTGT 178129
|||| ||
Sbjct 20343 ATCTAGT 20337
>seq487
Length=114140
Score = 98.7 bits (108), Expect = 2e-15
Identities = 186/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGG---CAAATGGCATCTTTGTATGCGATGAAAGGC 214179
|||| ||| ||||| || || || ||| ||| ||||| ||||| ||||||||
Sbjct 16367 CCAAGGTTCTTCTGATTACTCTTACGGTTGCAA---GCATCCTTGTAGAGCATGAAAGGG 16311
Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239
|||| |||| ||| || | || ||| | ||| || | |||||||| | | |
Sbjct 16310 TTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGTC 16251
Query 214240 TTTTTGGCTCTTCCCTCGTTT-TCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTA 214298
|| | | ||| ||| | |||||||| || ||||||| ||||||||| ||||||
Sbjct 16250 TTGC-GACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTA 16192
Query 214299 GACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCT 214358
|||||| |||||||||| |||||||||||| | || ||||| ||||| | |
Sbjct 16191 AACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTC 16132
Query 214359 GACTCTTTTCATGAAAAGGTCGGAAGTCCA 214388
|| | |||||||| || || | | ||||
Sbjct 16131 AACACGCTTCATGAAGAGATCTGGAATCCA 16102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203723365214552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |