Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq359 154 4e-32 seq116 122 2e-22 seq487 98.7 2e-15 >seq359 Length=494912 Score = 154 bits (170), Expect = 4e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 177922 TCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG 177981 |||| | ||||| ||||||||||| ||||| || || ||||||||||| || ||| | Sbjct 437761 TCCATAGCTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCG 437820 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || || || ||||| ||||| |||||||| || |||||||| || ||||||| Sbjct 437821 ATACGATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGC 437880 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | |||||||| ||||| |||||||| ||||| | |||||| |||| || ||| Sbjct 437881 AACGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACA 437940 Query 178102 TCCAAAAAGAATCAACAC 178119 | ||||| | | ||||| Sbjct 437941 TTCAAAAGGTACGAACAC 437958 >seq116 Length=121463 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || || ||||| ||||| || || || || ||||| |||||||| Sbjct 20523 TCACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACGTCAAGT 20464 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || || || ||||| ||||| || ||||||||||| | Sbjct 20463 CCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCA 20404 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || ||||||||||| | || || |||| || ||| |||| || || || || || | Sbjct 20403 AGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTC 20344 Query 178123 ATCTTGT 178129 |||| || Sbjct 20343 ATCTAGT 20337 >seq487 Length=114140 Score = 98.7 bits (108), Expect = 2e-15 Identities = 186/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 214123 CCAAAGTTTTTCTGGTTGCTTTTGCGG---CAAATGGCATCTTTGTATGCGATGAAAGGC 214179 |||| ||| ||||| || || || ||| ||| ||||| ||||| |||||||| Sbjct 16367 CCAAGGTTCTTCTGATTACTCTTACGGTTGCAA---GCATCCTTGTAGAGCATGAAAGGG 16311 Query 214180 ATTCCCACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACC 214239 |||| |||| ||| || | || ||| | ||| || | |||||||| | | | Sbjct 16310 TTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATGGTC 16251 Query 214240 TTTTTGGCTCTTCCCTCGTTT-TCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTA 214298 || | | ||| ||| | |||||||| || ||||||| ||||||||| |||||| Sbjct 16250 TTGC-GACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTA 16192 Query 214299 GACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCT 214358 |||||| |||||||||| |||||||||||| | || ||||| ||||| | | Sbjct 16191 AACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTC 16132 Query 214359 GACTCTTTTCATGAAAAGGTCGGAAGTCCA 214388 || | |||||||| || || | | |||| Sbjct 16131 AACACGCTTCATGAAGAGATCTGGAATCCA 16102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723365214552