Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq116 123 2e-23
seq344 111 1e-19
>seq116
Length=121463
Score = 123 bits (136), Expect = 2e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || ||||||||| ||||| |||||||||
Sbjct 20319 CCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 20378
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || ||||| |||||||||||||| || ||||| |||||||| | ||||
Sbjct 20379 AGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGA 20438
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 20439 ATGCCCTCCTTGTCCTGGATCTT 20461
>seq344
Length=396322
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || |||||||| ||||| || || |||
Sbjct 110620 CCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAG 110679
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| |||||||||||||| ||||| |||| ||||| ||||| | ||||
Sbjct 110680 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGA 110739
Query 41756 ACGCTCTCCTTGTC 41769
| || |||||||||
Sbjct 110740 ATGCCCTCCTTGTC 110753
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||||||| || || ||||||||| |||||||| || ||
Sbjct 110100 CCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGAC 110159
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||| || | || || | |||||| || ||||| || || | ||| ||||| | ||
Sbjct 110160 AAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGG 110219
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| ||| ||| | || || ||| || || || ||
Sbjct 110220 ATACCCTCCTTGTCCTGGATCTTTGACTTGA-CGTTATCAATAGTATCAGATGATTCGAC 110278
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || ||||| ||||| ||||||||||||||
Sbjct 110279 CTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301064369600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |