Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq85 114 3e-20
>seq85
Length=1171154
Score = 114 bits (126), Expect = 3e-20
Identities = 305/462 (66%), Gaps = 8/462 (2%)
Strand=Plus/Minus
Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCA 230239
|||||||||| |||| | |||||| ||||| | || ||||| ||| | | |
Sbjct 1031462 AGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTA 1031403
Query 230240 TCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCA 230299
| || ||| || ||| ||| ||||||| || || | || |||||| |||||
Sbjct 1031402 TATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCT 1031343
Query 230300 GTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC 230358
|| ||||| |||||||| || | | || | | || ||| || | | ||||
Sbjct 1031342 CCCGTGACGAAGGTCTCCA-CACCGACTTTGCCTGCCTCTTGTTCTCCCACTT---GAAC 1031287
Query 230359 AAGCTACCATTCGAGA---CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415
| | ||| | || | ||| || | | ||||| || || ||||| | ||| |
Sbjct 1031286 CATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAA 1031227
Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475
|||||| | ||| ||| |||| ||| ||| | ||||||||||||| | |||
Sbjct 1031226 GAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAG 1031167
Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535
|| ||||| || ||||| || || || | | | || || ||| ||||||| |||
Sbjct 1031166 CAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTAC 1031107
Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595
|| || ||||| || | || |||||| ||| || ||| || ||||||||||||
Sbjct 1031106 AAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCAACTTC 1031047
Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||||| ||||||||| ||||| || | ||||||| |||
Sbjct 1031046 TTCGAGAAGCGTGTCGCCGACTACCAAAAAGCTGGTGTTATG 1031005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057821777247320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |