Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq85 114 3e-20 >seq85 Length=1171154 Score = 114 bits (126), Expect = 3e-20 Identities = 305/462 (66%), Gaps = 8/462 (2%) Strand=Plus/Minus Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCA 230239 |||||||||| |||| | |||||| ||||| | || ||||| ||| | | | Sbjct 1031462 AGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTA 1031403 Query 230240 TCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCA 230299 | || ||| || ||| ||| ||||||| || || | || |||||| ||||| Sbjct 1031402 TATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCT 1031343 Query 230300 GTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC 230358 || ||||| |||||||| || | | || | | || ||| || | | |||| Sbjct 1031342 CCCGTGACGAAGGTCTCCA-CACCGACTTTGCCTGCCTCTTGTTCTCCCACTT---GAAC 1031287 Query 230359 AAGCTACCATTCGAGA---CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415 | | ||| | || | ||| || | | ||||| || || ||||| | ||| | Sbjct 1031286 CATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAA 1031227 Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||| | ||| ||| |||| ||| ||| | ||||||||||||| | ||| Sbjct 1031226 GAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAG 1031167 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 || ||||| || ||||| || || || | | | || || ||| ||||||| ||| Sbjct 1031166 CAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTAC 1031107 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 || || ||||| || | || |||||| ||| || ||| || |||||||||||| Sbjct 1031106 AAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCAACTTC 1031047 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| ||||||||| ||||| || | ||||||| ||| Sbjct 1031046 TTCGAGAAGCGTGTCGCCGACTACCAAAAAGCTGGTGTTATG 1031005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821777247320