Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq145 192 7e-44
seq85 96.9 4e-15
>seq145
Length=311005
Score = 192 bits (212), Expect = 7e-44
Identities = 1188/1887 (63%), Gaps = 53/1887 (3%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| | |||| || || |||||||| || | ||| | | ||||| ||
Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 106357
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
||||| ||||| ||||| || ||||||||||| || | || |||||||| | | |
Sbjct 106356 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 106297
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
|| || || | || ||||| | ||| || |||| ||| ||||| | ||||
Sbjct 106296 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 106237
Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
|| | ||| || || || || ||||| | || || | ||||| || | ||| |
Sbjct 106236 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 106177
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 106176 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 106117
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
| ||| || | || | ||| || || || || || || | | |||| || ||
Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057
Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284
| |||||| || ||||| |||||||| || || | ||||| || | |||||||
Sbjct 106056 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 105997
Query 53285 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342
| || | |||||| | || | |||| |||| | ||||||||| | ||| |||
Sbjct 105996 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 105939
Query 53343 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 53398
||| || || || | |||| || ||| | ||||| |||
Sbjct 105938 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 105883
Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457
|| | || | || || || || || ||| | || || ||| ||| || |||||
Sbjct 105882 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 105824
Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517
|||||||||| |||| |||| || || || | || ||||| | | |||||
Sbjct 105823 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGG-GAGTCGAAGAG 105765
Query 53518 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576
| || | || || | || || ||||||| | | |||||||| || | ||| |
Sbjct 105764 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 105706
Query 53577 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635
|| | || || |||| ||| || || || || || || || || || | ||| |
Sbjct 105705 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 105646
Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT------ 53689
|| | || | | ||||| | || || |||| || | ||||| ||
Sbjct 105645 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 105586
Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749
|| | | | |||| ||| |||| |||||||| || ||||| | || | | ||
Sbjct 105585 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 105527
Query 53750 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808
|||| | |||||| ||||| ||||| | |||||| || | || | |||||
Sbjct 105526 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 105467
Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868
||||||| ||| || |||||||| || || ||||| || | || || || | || |
Sbjct 105466 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 105407
Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTC 53925
|| | || | | ||| | | |||| | || | ||| | ||| |||
Sbjct 105406 CTCGAGGATGGAGTACCAAAGCTTCTGGGCCT---TGATGGTCTTGCGACCCTTGCCTTC 105350
Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985
| ||||| ||| | ||||| ||||| || |||||| | | || ||
Sbjct 105349 TGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 105290
Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAA 54042
|| || | || ||||||| | ||| | | | ||| |||| || || ||||| ||
Sbjct 105289 GCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGAA 105233
Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102
|||||| |||||||| ||||| || ||||| | | | | |||||| |||||
Sbjct 105232 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTG 105173
Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162
|||||| ||||| |||||| | | | ||||| ||||| || || | ||| || |
Sbjct 105172 GTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGC 105113
Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222
| | | ||||| || || ||||| ||||| || | ||||| || ||||| || ||||
Sbjct 105112 GAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAAC 105053
Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282
|| | ||| |||| |||||| ||||| || || || || | || || |||| |
Sbjct 105052 TCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGT 104993
Query 54283 GGCACGAATATT----ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
|||||| || | || ||| ||||| || || || || | || ||||| | |
Sbjct 104992 GGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGG 104937
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
| || || | ||||| || || || || ||||| || ||| |||||| | | |
Sbjct 104936 CACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 104877
Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458
| || ||| | ||| | || || || ||| | ||| ||||| ||||| |
Sbjct 104876 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 104817
Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518
|||| | || || | || |||||| ||||||||||| || ||||| |
Sbjct 104816 TAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGT 104757
Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578
|||| || || || || | ||| | |||||| || || | ||| | |||||| | |
Sbjct 104756 GAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGA 104697
Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 54636
|| | ||| ||| | || | ||| || || ||||| || | ||| ||||| ||
Sbjct 104696 GACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TC 104639
Query 54637 TCGTTCGTAAATAATAACTGAGTTGAG 54663
|| || || | ||| | ||||||||
Sbjct 104638 CCGATCATAGACAATGGCAGAGTTGAG 104612
>seq85
Length=1171154
Score = 96.9 bits (106), Expect = 4e-15
Identities = 567/917 (62%), Gaps = 62/917 (7%)
Strand=Plus/Plus
Query 23828 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 23887
|| |||||| || ||||||||| || | ||||| || ||||| || || || || ||
Sbjct 1031002 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 1031061
Query 23888 TTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA 23947
| | || || || |||||||| ||| |||| |||| || || || ||| |
Sbjct 1031062 GGCAAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTA-ATACTTCTCGT 1031120
Query 23948 TCCCAATTCAGAA-ATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCAC 24006
| || | || | || | ||| ||||| ||||| || ||| ||||||| ||
Sbjct 1031121 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 1031180
Query 24007 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 24066
||||| || | ||| | |||||||| |||| | || ||||| || || |
Sbjct 1031181 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 1031240
Query 24067 CCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 24124
| || || || |||| |||| |||| || | || || ||| || ||
Sbjct 1031241 CAGCCTCGGTAATAACG--TCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGA 1031298
Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184
|||| | || || || ||| ||| ||||| ||||| | || | ||||||||
Sbjct 1031299 GAACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGA 1031358
Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244
|| || || || ||||| || |||||||| || | ||| ||||| || || ||||| ||
Sbjct 1031359 GAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACC 1031418
Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGC 24301
|| ||||| || || || || || |||||||||| || | | | | | | |
Sbjct 1031419 GGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTC 1031478
Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA---------------- 24345
| || || ||||| || ||||| ||||||||||| || |
Sbjct 1031479 CTTATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTAGATC 1031538
Query 24346 ----------------------------CACAAGGCA------TTGTCTCTATAGCATTA 24371
||| ||||| | ||||| ||||||||
Sbjct 1031539 GTGTTAGAATATGGCACTGTGCTAATGACACGAGGCAACTTACTGGTCTCGATAGCATTG 1031598
Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431
|| |||||| | || | || |||| ||||| || || | ||| || |
Sbjct 1031599 AACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATGAGAAGGGAGTATGTC 1031658
Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491
|| || || ||||| || || ||||| || |||||||| || | |||||| | | |
Sbjct 1031659 TCTGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 1031718
Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551
|| || ||| | ||||| || | || || || || ||||||||| || ||
Sbjct 1031719 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 1031778
Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAA 24608
|| || || | || || | ||| ||| | || || | ||| || |||||
Sbjct 1031779 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 1031838
Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668
|| | || ||| || || | ||| | |||||| | ||||| ||||| |||||||||||
Sbjct 1031839 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 1031898
Query 24669 TTATACATATTCCAGAT 24685
|| ||||| | ||||||
Sbjct 1031899 TTGTACATCTGCCAGAT 1031915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593720382870720
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