Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq145 192 7e-44 seq85 96.9 4e-15 >seq145 Length=311005 Score = 192 bits (212), Expect = 7e-44 Identities = 1188/1887 (63%), Gaps = 53/1887 (3%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || || |||||||| || | ||| | | ||||| || Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 106357 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 106356 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 106297 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 106296 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 106237 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | ||| || || || || ||||| | || || | ||||| || | ||| | Sbjct 106236 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 106177 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 106176 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 106117 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | ||| || | || | ||| || || || || || || | | |||| || || Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 106056 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 105997 Query 53285 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342 | || | |||||| | || | |||| |||| | ||||||||| | ||| ||| Sbjct 105996 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 105939 Query 53343 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 53398 ||| || || || | |||| || ||| | ||||| ||| Sbjct 105938 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 105883 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 || | || | || || || || || ||| | || || ||| ||| || ||||| Sbjct 105882 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 105824 Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 |||||||||| |||| |||| || || || | || ||||| | | ||||| Sbjct 105823 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGG-GAGTCGAAGAG 105765 Query 53518 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 105764 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 105706 Query 53577 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 || | || || |||| ||| || || || || || || || || || | ||| | Sbjct 105705 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 105646 Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT------ 53689 || | || | | ||||| | || || |||| || | ||||| || Sbjct 105645 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 105586 Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 || | | | |||| ||| |||| |||||||| || ||||| | || | | || Sbjct 105585 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 105527 Query 53750 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 |||| | |||||| ||||| ||||| | |||||| || | || | ||||| Sbjct 105526 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 105467 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 ||||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 105466 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 105407 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTC 53925 || | || | | ||| | | |||| | || | ||| | ||| ||| Sbjct 105406 CTCGAGGATGGAGTACCAAAGCTTCTGGGCCT---TGATGGTCTTGCGACCCTTGCCTTC 105350 Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 | ||||| ||| | ||||| ||||| || |||||| | | || || Sbjct 105349 TGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 105290 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAA 54042 || || | || ||||||| | ||| | | | ||| |||| || || ||||| || Sbjct 105289 GCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGAA 105233 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 |||||| |||||||| ||||| || ||||| | | | | |||||| ||||| Sbjct 105232 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTG 105173 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || | Sbjct 105172 GTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGC 105113 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | | ||||| || || ||||| ||||| || | ||||| || ||||| || |||| Sbjct 105112 GAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAAC 105053 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 || | ||| |||| |||||| ||||| || || || || | || || |||| | Sbjct 105052 TCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGT 104993 Query 54283 GGCACGAATATT----ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 |||||| || | || ||| ||||| || || || || | || ||||| | | Sbjct 104992 GGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGG 104937 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | || || | ||||| || || || || ||||| || ||| |||||| | | | Sbjct 104936 CACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 104877 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | || ||| | ||| | || || || ||| | ||| ||||| ||||| | Sbjct 104876 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 104817 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 |||| | || || | || |||||| ||||||||||| || ||||| | Sbjct 104816 TAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGT 104757 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 |||| || || || || | ||| | |||||| || || | ||| | |||||| | | Sbjct 104756 GAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGA 104697 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 54636 || | ||| ||| | || | ||| || || ||||| || | ||| ||||| || Sbjct 104696 GACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TC 104639 Query 54637 TCGTTCGTAAATAATAACTGAGTTGAG 54663 || || || | ||| | |||||||| Sbjct 104638 CCGATCATAGACAATGGCAGAGTTGAG 104612 >seq85 Length=1171154 Score = 96.9 bits (106), Expect = 4e-15 Identities = 567/917 (62%), Gaps = 62/917 (7%) Strand=Plus/Plus Query 23828 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 23887 || |||||| || ||||||||| || | ||||| || ||||| || || || || || Sbjct 1031002 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 1031061 Query 23888 TTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAA 23947 | | || || || |||||||| ||| |||| |||| || || || ||| | Sbjct 1031062 GGCAAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTA-ATACTTCTCGT 1031120 Query 23948 TCCCAATTCAGAA-ATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCAC 24006 | || | || | || | ||| ||||| ||||| || ||| ||||||| || Sbjct 1031121 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 1031180 Query 24007 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 24066 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 1031181 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 1031240 Query 24067 CCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 24124 | || || || |||| |||| |||| || | || || ||| || || Sbjct 1031241 CAGCCTCGGTAATAACG--TCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGA 1031298 Query 24125 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 24184 |||| | || || || ||| ||| ||||| ||||| | || | |||||||| Sbjct 1031299 GAACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGA 1031358 Query 24185 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 24244 || || || || ||||| || |||||||| || | ||| ||||| || || ||||| || Sbjct 1031359 GAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACC 1031418 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGC 24301 || ||||| || || || || || |||||||||| || | | | | | | | Sbjct 1031419 GGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTC 1031478 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA---------------- 24345 | || || ||||| || ||||| ||||||||||| || | Sbjct 1031479 CTTATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTAGATC 1031538 Query 24346 ----------------------------CACAAGGCA------TTGTCTCTATAGCATTA 24371 ||| ||||| | ||||| |||||||| Sbjct 1031539 GTGTTAGAATATGGCACTGTGCTAATGACACGAGGCAACTTACTGGTCTCGATAGCATTG 1031598 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 || |||||| | || | || |||| ||||| || || | ||| || | Sbjct 1031599 AACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATGAGAAGGGAGTATGTC 1031658 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || || || ||||| || || ||||| || |||||||| || | |||||| | | | Sbjct 1031659 TCTGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 1031718 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || || ||| | ||||| || | || || || || ||||||||| || || Sbjct 1031719 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 1031778 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAA 24608 || || || | || || | ||| ||| | || || | ||| || ||||| Sbjct 1031779 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 1031838 Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 || | || ||| || || | ||| | |||||| | ||||| ||||| ||||||||||| Sbjct 1031839 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 1031898 Query 24669 TTATACATATTCCAGAT 24685 || ||||| | |||||| Sbjct 1031899 TTGTACATCTGCCAGAT 1031915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720382870720