Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq85 136 4e-27 seq95 113 5e-20 seq58 91.5 2e-13 >seq85 Length=1171154 Score = 136 bits (150), Expect = 4e-27 Identities = 315/468 (67%), Gaps = 5/468 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| | | |||||| | | || | | Sbjct 1031529 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 1031470 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| |||| || || ||||| || || || ||||| ||||||| || || ||| Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| | ||||| ||| | ||||| || || || ||||| || || || ||| ||||||| Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||||||| | ||||| ||||| || |||||||||||| | ||||| || ||| Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACTTG 1031290 Query 117209 GTGCAGCGACCGAGCGCGGCGCGC-GTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 || || || ||| || || ||| || | | ||||| || || | ||||| Sbjct 1031289 AACCATCGTCCAAGC-AAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGA 1031231 Query 117268 GCAGCGCTTCCTCACCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGA 117326 ||| ||| | || || || | | || |||| ||| || || | || | || Sbjct 1031230 GCAAGAGTTCTTGACTGATGCTCTTCCCTGTGC-TCTTCTCGGCATGAACGCTGCTTTGA 1031172 Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386 || ||||||||| ||||||||||| || | ||||| |||| || | || ||| Sbjct 1031171 TGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGT 1031112 Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 | ||||| | ||||||| | ||||| ||| | |||||| |||| Sbjct 1031111 ATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTG 1031064 Score = 132 bits (146), Expect = 5e-26 Identities = 205/287 (71%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||| || | || ||| Sbjct 1031915 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 1031856 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | | || ||| | ||| | | || || Sbjct 1031855 TCCAAGGATCTCCA-CGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTC 1031797 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||| || ||||| || ||||||||||| || | ||||| Sbjct 1031796 CCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCG 1031737 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| || || |||| ||||| | ||||| || ||||||||||| || || ||| | Sbjct 1031736 ATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGA 1031678 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| | ||||| || | || || ||||||||||| ||| Sbjct 1031677 TGGAGAACATCCACTCAGAGACATACTCCCTTCTCATCGACACATAC 1031631 Score = 109 bits (120), Expect = 6e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| |||||||| |||| |||||| | |||| | | | Sbjct 580627 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 580686 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||||||||| | || |||||||| | | Sbjct 580687 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 580746 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| || || || || || || | |||||||| ||| |||||||||||||||| Sbjct 580747 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGG 580806 Query 40880 AGGCCACGCTGCA 40892 || |||| || || Sbjct 580807 AGTCCACTCTCCA 580819 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| |||||||| |||| ||||| | | |||| | | | ||||| Sbjct 580349 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 580408 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| |||||||| ||| | |||||||| || | |||| ||| ||||| Sbjct 580409 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 580468 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||| ||| || ||||||||||||||||| | || || ||| Sbjct 580469 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCAT 580528 Query 40894 CTAGT 40898 || || Sbjct 580529 CTCGT 580533 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||||| |||| |||||| | | Sbjct 580845 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 580904 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| ||| || | ||||| ||||| ||||| | ||||| Sbjct 580905 GATACTATTGATAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 580963 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||| | ||| || || || || || || | || ||| | || || || Sbjct 580964 GCAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATTATAA 581023 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 581024 CATCCAGAAGGAGTCTACTCTTCATCTGGT 581053 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||| ||||| | |||||||| |||| || | || || || ||| |||| Sbjct 581166 GATAAGGAGGGTATCCCACCCGACCAGCAGAGACTAATTTTTGCTGGTAAGCAGTTGGAG 581225 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| | | |||||||||||||||||||||| | || || ||||| |||||| Sbjct 581226 GATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGTTG 581285 Query 40903 CG 40904 || Sbjct 581286 CG 581287 >seq95 Length=967449 Score = 113 bits (124), Expect = 5e-20 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 |||||||| || || ||| | || || || | |||| | | | |||| ||||| Sbjct 168776 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACG-TCAAGTC 168718 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||| ||| | ||||| ||||| ||||||| ||| ||||| Sbjct 168717 CAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAA 168658 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | || |||||| |||||||||||||||||||||| | || || || Sbjct 168657 GCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCA 168598 Query 40893 TCTAGT 40898 |||||| Sbjct 168597 TCTAGT 168592 >seq58 Length=1028984 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757 ||||| ||||| ||||| || || || || ||| |||| || || || |||| | | | Sbjct 907322 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 907381 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | || | ||||| || || | ||||| ||||| |||||| | ||||||||||| | Sbjct 907382 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 907440 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || ||||| || || | || || || |||||||||||| || || Sbjct 907441 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 907500 Query 40878 GG 40879 || Sbjct 907501 GG 907502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218143800640