Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq85 136 4e-27
seq95 113 5e-20
seq58 91.5 2e-13
>seq85
Length=1171154
Score = 136 bits (150), Expect = 4e-27
Identities = 315/468 (67%), Gaps = 5/468 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| ||| |||| |||||||||| ||||| | | |||||| | | || | |
Sbjct 1031529 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 1031470
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|||| |||| || || ||||| || || || ||||| ||||||| || || |||
Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
||| | ||||| ||| | ||||| || || || ||||| || || || ||| |||||||
Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
||||||||| | ||||| ||||| || |||||||||||| | ||||| || |||
Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACTTG 1031290
Query 117209 GTGCAGCGACCGAGCGCGGCGCGC-GTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267
|| || || ||| || || ||| || | | ||||| || || | |||||
Sbjct 1031289 AACCATCGTCCAAGC-AAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGA 1031231
Query 117268 GCAGCGCTTCCTCACCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGA 117326
||| ||| | || || || | | || |||| ||| || || | || | ||
Sbjct 1031230 GCAAGAGTTCTTGACTGATGCTCTTCCCTGTGC-TCTTCTCGGCATGAACGCTGCTTTGA 1031172
Query 117327 TGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGC 117386
|| ||||||||| ||||||||||| || | ||||| |||| || | || |||
Sbjct 1031171 TGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGT 1031112
Query 117387 ACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433
| ||||| | ||||||| | ||||| ||| | |||||| ||||
Sbjct 1031111 ATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTG 1031064
Score = 132 bits (146), Expect = 5e-26
Identities = 205/287 (71%), Gaps = 7/287 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||||| ||| || | || |||
Sbjct 1031915 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 1031856
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | | || ||| | ||| | | || ||
Sbjct 1031855 TCCAAGGATCTCCA-CGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTC 1031797
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || ||||| || ||||| || ||||||||||| || | |||||
Sbjct 1031796 CCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCG 1031737
Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| || || |||| ||||| | ||||| || ||||||||||| || || ||| |
Sbjct 1031736 ATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGA 1031678
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||||| | ||||| || | || || ||||||||||| |||
Sbjct 1031677 TGGAGAACATCCACTCAGAGACATACTCCCTTCTCATCGACACATAC 1031631
Score = 109 bits (120), Expect = 6e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || || || ||||| |||||||| |||| |||||| | |||| | | |
Sbjct 580627 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 580686
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| ||||||||||| | || |||||||| | |
Sbjct 580687 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGA 580746
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| ||| || || || || || || | |||||||| ||| ||||||||||||||||
Sbjct 580747 TCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGG 580806
Query 40880 AGGCCACGCTGCA 40892
|| |||| || ||
Sbjct 580807 AGTCCACTCTCCA 580819
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| |||||||| |||| ||||| | | |||| | | | |||||
Sbjct 580349 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 580408
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| |||||||| ||| | |||||||| || | |||| ||| |||||
Sbjct 580409 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 580468
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| ||||| ||| || ||||||||||||||||| | || || |||
Sbjct 580469 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCAT 580528
Query 40894 CTAGT 40898
|| ||
Sbjct 580529 CTCGT 580533
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || || ||||| |||| |||||| | |
Sbjct 580845 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 580904
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| ||||| ||| || | ||||| ||||| ||||| | |||||
Sbjct 580905 GATACTATTGATAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 580963
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||||| | ||| || || || || || || | || ||| | || || ||
Sbjct 580964 GCAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATTATAA 581023
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 581024 CATCCAGAAGGAGTCTACTCTTCATCTGGT 581053
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|| || ||||| ||||| | |||||||| |||| || | || || || ||| ||||
Sbjct 581166 GATAAGGAGGGTATCCCACCCGACCAGCAGAGACTAATTTTTGCTGGTAAGCAGTTGGAG 581225
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| | | |||||||||||||||||||||| | || || ||||| ||||||
Sbjct 581226 GATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGTTG 581285
Query 40903 CG 40904
||
Sbjct 581286 CG 581287
>seq95
Length=967449
Score = 113 bits (124), Expect = 5e-20
Identities = 138/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|||||||| || || ||| | || || || | |||| | | | |||| |||||
Sbjct 168776 ACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACG-TCAAGTC 168718
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| |||||||| ||| | ||||| ||||| ||||||| ||| |||||
Sbjct 168717 CAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAA 168658
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || || | || |||||| |||||||||||||||||||||| | || || ||
Sbjct 168657 GCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCA 168598
Query 40893 TCTAGT 40898
||||||
Sbjct 168597 TCTAGT 168592
>seq58
Length=1028984
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/182 (72%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757
||||| ||||| ||||| || || || || ||| |||| || || || |||| | | |
Sbjct 907322 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 907381
Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| || | ||||| || || | ||||| ||||| |||||| | ||||||||||| |
Sbjct 907382 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 907440
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| || || ||||| || || | || || || |||||||||||| || ||
Sbjct 907441 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 907500
Query 40878 GG 40879
||
Sbjct 907501 GG 907502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218143800640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |