Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq149 96.9 7e-15
seq145 89.7 1e-12
>seq149
Length=511309
Score = 96.9 bits (106), Expect = 7e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
||||||||| | || || |||| ||||| || |||||||| || || |||||||| ||
Sbjct 209877 CTTCCTCATCTCCTCCTCTACGGGCCTCCTGGTACAGGCAAAACCTCCACCATCCTCGCC 209936
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
|| ||||||| | | ||| ||||||| | | || ||||| || || |||
Sbjct 209937 CTCGCCCGAAAAATCTACGGCTCCAAGAACATGCGCCAAATGGTTCTCGAACTCAATGCT 209996
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171
|||||||| || || | ||||| || ||||| |||||||||| ||| ||
Sbjct 209997 TCTGACGACCGTGGCATCGACGTTGTGCGCGAACAGATCAAGACGTTCGCC 210047
>seq145
Length=311005
Score = 89.7 bits (98), Expect = 1e-12
Identities = 590/936 (63%), Gaps = 32/936 (3%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
||||| | ||| | | ||||| ||||| || || |||| ||| || || ||| |
Sbjct 104639 GATTTCAACTACCAATACTTTGGATTCAAGACTCTTGAGAGATCATACCTTCTCCGTCTC 104698
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
|| |||||||| | ||||| || |||||| | ||| ||||||||||||| ||||||
Sbjct 104699 GAGGGCAAGATTGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCAC 104758
Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATG 248985
|||||| || ||||| | ||||||| |||| |||| || | || |
Sbjct 104759 GGGGATGATATTGAGAGTGCTATCGAGACATACAATTTAATGTCCAGCAAGTACT---TT 104815
Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTG 249044
||||| || | || || ||||| |||||| || | ||| | || || || ||
Sbjct 104816 ACACACGCGTCTCCAACCCTCTTTGCCGCCGGCACACCACAAGCA-CAACTCTCTTCATG 104874
Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104
||| | | | |||| | || ||| | ||||||| ||||| || || || | ||||
Sbjct 104875 CTTCTTGATCGACATGAAGGAGGACAGTATCGACGGGATTTACGATACTCTCA---AGAC 104931
Query 249105 ---GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161
|| | ||| || || || || || |||||||| ||| || ||||| ||
Sbjct 104932 TTGTGCCATGATCTCCAAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGC 104991
Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCG 249221
| || | ||||| || ||||| ||| | | ||||| || || | || ||
Sbjct 104992 CACTGGAGCTTACATTGCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCG 105051
Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTC 249275
| || | ||| ||||| | | |||||| || ||||| || |
Sbjct 105052 AGTTTTCAACAACACAGCCAGATATGTTGACCAGGGTGGAAATAAGCGCC---CTGGTGC 105108
Query 249276 GTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAA 249335
||||| || || | || |||||||| ||| | || |||||||| || | |||
Sbjct 105109 TTTCGCGATCTACCTCGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAA 105168
Query 249336 GAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGA 249395
|||| |||| || ||| | | || || || |||||||||| || ||| | | ||
Sbjct 105169 GAACCACGGAAAGGAGGAAGTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGA 105228
Query 249396 CTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CG 249454
| |||||| || || || | || ||||| || | | || ||| |
Sbjct 105229 TCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTG 105288
Query 249455 CCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAAT 249514
|||||| | | | ||| | |||| | ||| || || |||| |||| |||||
Sbjct 105289 CCCCGGTCTTGCT-GATGTTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGG 105347
Query 249515 CCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCTTTTTGCGAAGGTGGTGGAGT 249571
| | |||| | ||||||| |||||||| | || |||| | | |||
Sbjct 105348 CAGAAGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGG 105407
Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630
| || | ||||| || || | | || | | ||| || || |||||| ||||||
Sbjct 105408 CGCAAACCGAGAC-CGGAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGT 105466
Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690
|| || | | ||||||||||||||| || |||||||| ||||| | || |||||
Sbjct 105467 AATCAGAAGAACCTTGGTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATAC 105526
Query 249691 TCGTCCA-AGGAGGAGATTGCCGTCTGCAACCTGGC 249725
| || || || ||| | || || || ||| ||||
Sbjct 105527 T-GTGCACCTGACGAGGTCGCTGTTTGTAACTTGGC 105561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073764143748352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |