Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq149 96.9 7e-15 seq145 89.7 1e-12 >seq149 Length=511309 Score = 96.9 bits (106), Expect = 7e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||||||| | || || |||| ||||| || |||||||| || || |||||||| || Sbjct 209877 CTTCCTCATCTCCTCCTCTACGGGCCTCCTGGTACAGGCAAAACCTCCACCATCCTCGCC 209936 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 || ||||||| | | ||| ||||||| | | || ||||| || || ||| Sbjct 209937 CTCGCCCGAAAAATCTACGGCTCCAAGAACATGCGCCAAATGGTTCTCGAACTCAATGCT 209996 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 |||||||| || || | ||||| || ||||| |||||||||| ||| || Sbjct 209997 TCTGACGACCGTGGCATCGACGTTGTGCGCGAACAGATCAAGACGTTCGCC 210047 >seq145 Length=311005 Score = 89.7 bits (98), Expect = 1e-12 Identities = 590/936 (63%), Gaps = 32/936 (3%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| | ||| | | ||||| ||||| || || |||| ||| || || ||| | Sbjct 104639 GATTTCAACTACCAATACTTTGGATTCAAGACTCTTGAGAGATCATACCTTCTCCGTCTC 104698 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 || |||||||| | ||||| || |||||| | ||| ||||||||||||| |||||| Sbjct 104699 GAGGGCAAGATTGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCAC 104758 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATG 248985 |||||| || ||||| | ||||||| |||| |||| || | || | Sbjct 104759 GGGGATGATATTGAGAGTGCTATCGAGACATACAATTTAATGTCCAGCAAGTACT---TT 104815 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTG 249044 ||||| || | || || ||||| |||||| || | ||| | || || || || Sbjct 104816 ACACACGCGTCTCCAACCCTCTTTGCCGCCGGCACACCACAAGCA-CAACTCTCTTCATG 104874 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| | | | |||| | || ||| | ||||||| ||||| || || || | |||| Sbjct 104875 CTTCTTGATCGACATGAAGGAGGACAGTATCGACGGGATTTACGATACTCTCA---AGAC 104931 Query 249105 ---GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGC 249161 || | ||| || || || || || |||||||| ||| || ||||| || Sbjct 104932 TTGTGCCATGATCTCCAAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGC 104991 Query 249162 GAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCG 249221 | || | ||||| || ||||| ||| | | ||||| || || | || || Sbjct 104992 CACTGGAGCTTACATTGCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCG 105051 Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTC 249275 | || | ||| ||||| | | |||||| || ||||| || | Sbjct 105052 AGTTTTCAACAACACAGCCAGATATGTTGACCAGGGTGGAAATAAGCGCC---CTGGTGC 105108 Query 249276 GTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAA 249335 ||||| || || | || |||||||| ||| | || |||||||| || | ||| Sbjct 105109 TTTCGCGATCTACCTCGAGCCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAA 105168 Query 249336 GAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGA 249395 |||| |||| || ||| | | || || || |||||||||| || ||| | | || Sbjct 105169 GAACCACGGAAAGGAGGAAGTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGA 105228 Query 249396 CTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CG 249454 | |||||| || || || | || ||||| || | | || ||| | Sbjct 105229 TCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTG 105288 Query 249455 CCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAAT 249514 |||||| | | | ||| | |||| | ||| || || |||| |||| ||||| Sbjct 105289 CCCCGGTCTTGCT-GATGTTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGG 105347 Query 249515 CCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCTTTTTGCGAAGGTGGTGGAGT 249571 | | |||| | ||||||| |||||||| | || |||| | | ||| Sbjct 105348 CAGAAGGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGG 105407 Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630 | || | ||||| || || | | || | | ||| || || |||||| |||||| Sbjct 105408 CGCAAACCGAGAC-CGGAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGT 105466 Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690 || || | | ||||||||||||||| || |||||||| ||||| | || ||||| Sbjct 105467 AATCAGAAGAACCTTGGTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATAC 105526 Query 249691 TCGTCCA-AGGAGGAGATTGCCGTCTGCAACCTGGC 249725 | || || || ||| | || || || ||| |||| Sbjct 105527 T-GTGCACCTGACGAGGTCGCTGTTTGTAACTTGGC 105561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764143748352