Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq145 304 1e-77
seq85 111 1e-19
>seq145
Length=311005
Score = 304 bits (336), Expect = 1e-77
Identities = 585/860 (68%), Gaps = 2/860 (0%)
Strand=Plus/Minus
Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177
|||| || || ||||| ||||| | |||||||||||||||| | || | || ||||||
Sbjct 105473 TCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 105414
Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TG 23236
|||| ||||| ||| | ||| | |||| || | | ||| || || ||
Sbjct 105413 TTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGA-TGGTCTTGCGACCCTTG 105355
Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296
|||||| |||||||||| | || | || ||||||||| |||||||| || || ||
Sbjct 105354 CCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGA 105295
Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356
||||| | | | || ||||| || |||| | | || ||||| || ||||
Sbjct 105294 CCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATG 105235
Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416
|| ||||| || ||||||||||||||||| || ||||| ||||| || ||||| || |||
Sbjct 105234 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 105175
Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476
||||||| | ||| | || || || || || || ||||| ||||||||||| |
Sbjct 105174 TGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 105115
Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536
|| || || || || | |||||| || ||||| || || || | ||| ||||||||| |
Sbjct 105114 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 105055
Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596
|||| ||||| || || | ||||||||| ||| | ||| || | | ||
Sbjct 105054 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 104995
Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656
| || || | |||| || | | ||| || ||||| | || || ||||| ||
Sbjct 104994 GTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCA 104935
Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716
|| || ||||| ||||| || || ||||| |||||||| || | ||| ||||||
Sbjct 104934 CAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAG 104875
Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776
|| ||||| | ||| |||| || || |||| | || || || || ||||| |||
Sbjct 104874 CATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTA 104815
Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836
||||| | ||||||| |||||| || ||||| || ||||| || || |||||
Sbjct 104814 AAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA 104755
Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATT 23896
||||||| || || | ||| ||||||| ||| || | ||| | | ||| | |
Sbjct 104754 ATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGA 104695
Query 23897 TTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGA 23956
|| || ||||| | | | || || |||||||| || | ||||| || || |||
Sbjct 104694 CGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGA 104635
Query 23957 TCGTGCACTATGGCCGAATT 23976
|| | || ||||| || ||
Sbjct 104634 TCATAGACAATGGCAGAGTT 104615
Score = 102 bits (112), Expect = 7e-17
Identities = 375/583 (64%), Gaps = 11/583 (2%)
Strand=Plus/Minus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| || || || |||||||| ||||||||||||| |||||| | || || ||
Sbjct 106448 TGGTACGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATAC 106389
Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
||| | || || | | || | ||||| | || | ||| || ||| ||||
Sbjct 106388 TCGTGATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGA 106329
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322
| || || || ||||| || ||||| | | | |||||| || || ||||| || |
Sbjct 106328 TGAAGGCACCACGATCAGCAGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAG 106269
Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCC--TCTGGACGGACCCGTT 22380
||||||| || | |||| || || || ||| | | | |||| ||| ||
Sbjct 106268 TCTTGTAAAGAGCCTTGATATCGGCAGGAAT--ATTAGGGACATTTTGGATGGAACCTCC 106211
Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440
|| | ||||| || || || |||| ||| | ||| || || | ||| ||
Sbjct 106210 ATCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTT 106151
Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500
| || | |||| || ||||| || || || | |||||| || || ||| |||||
Sbjct 106150 CAACAACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTT 106091
Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560
||||||| | || |||||| | || ||| || || || ||| ||| || || ||
Sbjct 106090 GGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGG 106031
Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC 22618
||| || || | || | ||| | | ||||||| ||| |||| ||| |
Sbjct 106030 CATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTG--ATTTGTTGCTTCAAG 105973
Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678
| | ||||||||| ||||||| || || || || ||||||||||||||| | | |
Sbjct 105972 GTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT---CCACATATCGTATTGGAGCTCT 105916
Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCAT 22721
|| | || ||| |||||||| || ||||| | |||||
Sbjct 105915 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCAT 105873
>seq85
Length=1171154
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||||||||| || || || ||||| |||| || ||| | ||
Sbjct 580845 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 580904
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | || | ||||| || || || ||||||||| || | || ||||||||
Sbjct 580905 GATACTATTGATAACGTCAAGTCAAAG-ATCCAGGACAAGGAGGGTATCCCACCCGACCA 580963
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || |||||||| || || | || || || || ||||||||
Sbjct 580964 GCAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATTATAA 581023
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || |||||||||||||| ||| | || | || ||||
Sbjct 581024 CATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGTA 581073
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||| |||| || || || || || | || ||||| ||||
Sbjct 581073 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 581132
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||| ||||| || | || |||||||||
Sbjct 581133 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 581192
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | ||||| || ||||| || |||||||| || ||| ||||||| || |||
Sbjct 581193 CAGAGACTAATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 581252
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|| || || || || ||||| ||||||||
Sbjct 581253 ATCCAGAAGGAGTCTACTCTCCATCTGGT 581281
Score = 102 bits (112), Expect = 7e-17
Identities = 149/208 (72%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || ||||| |||| || || | || |||| | |||| | ||||| |
Sbjct 580349 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAA---G 580405
Query 31277 AG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
|| || | | |||||||| ||| | || ||||||||||||||| | || |||||||||
Sbjct 580406 AGCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGC 580465
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||| | || ||| | ||| | ||||| ||||| || || ||||| ||||||
Sbjct 580466 AAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTT 580525
Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || | || | |||||||
Sbjct 580526 CATCTCGTCCTCCGTCTTCGTGGCGGTA 580553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765486178880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |