Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq145 304 1e-77 seq85 111 1e-19 >seq145 Length=311005 Score = 304 bits (336), Expect = 1e-77 Identities = 585/860 (68%), Gaps = 2/860 (0%) Strand=Plus/Minus Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 |||| || || ||||| ||||| | |||||||||||||||| | || | || |||||| Sbjct 105473 TCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 105414 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TG 23236 |||| ||||| ||| | ||| | |||| || | | ||| || || || Sbjct 105413 TTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGA-TGGTCTTGCGACCCTTG 105355 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 |||||| |||||||||| | || | || ||||||||| |||||||| || || || Sbjct 105354 CCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGA 105295 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | | || ||||| || |||| | | || ||||| || |||| Sbjct 105294 CCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATG 105235 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||||| || ||||||||||||||||| || ||||| ||||| || ||||| || ||| Sbjct 105234 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 105175 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||||| | ||| | || || || || || || ||||| ||||||||||| | Sbjct 105174 TGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 105115 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | |||||| || ||||| || || || | ||| ||||||||| | Sbjct 105114 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 105055 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 |||| ||||| || || | ||||||||| ||| | ||| || | | || Sbjct 105054 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 104995 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 | || || | |||| || | | ||| || ||||| | || || ||||| || Sbjct 104994 GTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCA 104935 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 || || ||||| ||||| || || ||||| |||||||| || | ||| |||||| Sbjct 104934 CAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAG 104875 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 || ||||| | ||| |||| || || |||| | || || || || ||||| ||| Sbjct 104874 CATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTA 104815 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 ||||| | ||||||| |||||| || ||||| || ||||| || || ||||| Sbjct 104814 AAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA 104755 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATT 23896 ||||||| || || | ||| ||||||| ||| || | ||| | | ||| | | Sbjct 104754 ATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGA 104695 Query 23897 TTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGA 23956 || || ||||| | | | || || |||||||| || | ||||| || || ||| Sbjct 104694 CGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGA 104635 Query 23957 TCGTGCACTATGGCCGAATT 23976 || | || ||||| || || Sbjct 104634 TCATAGACAATGGCAGAGTT 104615 Score = 102 bits (112), Expect = 7e-17 Identities = 375/583 (64%), Gaps = 11/583 (2%) Strand=Plus/Minus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || || || |||||||| ||||||||||||| |||||| | || || || Sbjct 106448 TGGTACGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATAC 106389 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 ||| | || || | | || | ||||| | || | ||| || ||| |||| Sbjct 106388 TCGTGATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGA 106329 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || ||||| || ||||| | | | |||||| || || ||||| || | Sbjct 106328 TGAAGGCACCACGATCAGCAGCCATCTGAACGATGGTACGCTGGGAGATCTCCCAGACAG 106269 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCC--TCTGGACGGACCCGTT 22380 ||||||| || | |||| || || || ||| | | | |||| ||| || Sbjct 106268 TCTTGTAAAGAGCCTTGATATCGGCAGGAAT--ATTAGGGACATTTTGGATGGAACCTCC 106211 Query 22381 ATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTT 22440 || | ||||| || || || |||| ||| | ||| || || | ||| || Sbjct 106210 ATCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTT 106151 Query 22441 GACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTT 22500 | || | |||| || ||||| || || || | |||||| || || ||| ||||| Sbjct 106150 CAACAACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTT 106091 Query 22501 GGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGG 22560 ||||||| | || |||||| | || ||| || || || ||| ||| || || || Sbjct 106090 GGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGG 106031 Query 22561 CATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGC 22618 ||| || || | || | ||| | | ||||||| ||| |||| ||| | Sbjct 106030 CATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTG--ATTTGTTGCTTCAAG 105973 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 | | ||||||||| ||||||| || || || || ||||||||||||||| | | | Sbjct 105972 GTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT---CCACATATCGTATTGGAGCTCT 105916 Query 22679 CCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCAT 22721 || | || ||| |||||||| || ||||| | ||||| Sbjct 105915 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCAT 105873 >seq85 Length=1171154 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| || || || ||||| |||| || ||| | || Sbjct 580845 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 580904 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | ||||| || || || ||||||||| || | || |||||||| Sbjct 580905 GATACTATTGATAACGTCAAGTCAAAG-ATCCAGGACAAGGAGGGTATCCCACCCGACCA 580963 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || |||||||| || || | || || || || |||||||| Sbjct 580964 GCAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATTATAA 581023 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || |||||||||||||| ||| | || | || |||| Sbjct 581024 CATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGTA 581073 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || || || || | || ||||| |||| Sbjct 581073 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 581132 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| || | || ||||||||| Sbjct 581133 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 581192 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||| || ||||| || |||||||| || ||| ||||||| || ||| Sbjct 581193 CAGAGACTAATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 581252 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || || || ||||| |||||||| Sbjct 581253 ATCCAGAAGGAGTCTACTCTCCATCTGGT 581281 Score = 102 bits (112), Expect = 7e-17 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || ||||| || ||||| |||| || || | || |||| | |||| | ||||| | Sbjct 580349 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAA---G 580405 Query 31277 AG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || || | | |||||||| ||| | || ||||||||||||||| | || ||||||||| Sbjct 580406 AGCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGC 580465 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | || ||| | ||| | ||||| ||||| || || ||||| |||||| Sbjct 580466 AAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTT 580525 Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || | || | ||||||| Sbjct 580526 CATCTCGTCCTCCGTCTTCGTGGCGGTA 580553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765486178880