Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq85 113 9e-20 seq116 93.3 8e-14 seq145 84.2 4e-11 >seq85 Length=1171154 Score = 113 bits (124), Expect = 9e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 101843 TTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT 101902 ||||| || ||||||||||||| | ||||| | | ||||| ||| || || | Sbjct 1031531 TTCCCTGC-ATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCT 1031473 Query 101903 ---TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959 || || | | | ||||||||||| || ||||| || |||||||| ||| || Sbjct 1031472 ACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCA 1031413 Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 ||||| || || |||||| | ||||| | ||| | |||| ||||| |||| |||||| Sbjct 1031412 TTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAAC 1031353 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| |||| || | ||||||||||| || ||||||||| ||| | |||| Sbjct 1031352 GAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTT 1031300 >seq116 Length=2555478 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA- 35448 |||| || ||| | ||||| |||||||| || || ||| | ||||||||||| ||||| Sbjct 797623 GCAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATAC 797682 Query 35449 --TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTA 35506 ||| || | |||||||| ||| | ||| |||| || | || | | | Sbjct 797683 GTCGATGCC---GAGACGGATTATACAGGACAAGGTGTTGACCAGCTTGCGGAGGTGATC 797739 Query 35507 AAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATG 35566 | | |||| | | ||||| |||| ||||||| ||| | | || |||||||||| | Sbjct 797740 CATAAACTGAAAAACAATCCTTATGACCGAAGGATAATTTTTTCTGCCTGGAATCCTAAG 797799 Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 ||| | | || ||||| || ||||| ||||||||| || || ||||| || Sbjct 797800 GATATGAAACTCATGGCCCTACCTCCCTGCCACATGTTCGCACAGTTTTACGT 797852 >seq145 Length=311005 Score = 84.2 bits (92), Expect = 4e-11 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||||||| |||||||||| || || ||| |||||||| ||||| || Sbjct 104967 CCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCCG 104908 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGT 94904 || || || || || | | | | | | |||||| || || ||||| | | ||| ||| Sbjct 104907 TCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGG-TGT 104849 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || ||| || || || || || || ||||| || | || ||||| | || || Sbjct 104848 GCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGACATTAAATTGTA 104789 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| || || || | || || |||||||| ||||||||||| | ||| ||||| Sbjct 104788 TGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCAT 104729 Query 95025 GTCCTGAGGGCGCTC 95039 || || || || || Sbjct 104728 GTGTTGTGGACGTTC 104714 Score = 84.2 bits (92), Expect = 4e-11 Identities = 119/168 (71%), Gaps = 12/168 (7%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| |||||||| ||||| || ||||| || | |||| ||| || || || | || || Sbjct 105361 ACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATC 105302 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 | ||| || |||||||||| |||||||||||| | ||| ||||||| || Sbjct 105301 AGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA----- 105247 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | || |||||||||||| | | ||| | ||| ||| ||||| Sbjct 105246 -ACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATC 105200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989581920636620