Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq145 178 2e-39 >seq145 Length=311005 Score = 178 bits (196), Expect = 2e-39 Identities = 1189/1889 (63%), Gaps = 53/1889 (3%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| || || ||||||||||| | ||| | | ||||| || Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 106357 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 106356 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 106297 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 106296 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 106237 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | ||| || ||||| || ||||| | || || | ||||| || | ||| | Sbjct 106236 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 106177 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | ||| | | | | | | |||||||| ||||||||||| ||| Sbjct 106176 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 106117 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | ||| || | || | ||| || || || || || || | |||| || || Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 106056 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 105997 Query 62523 T-ATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 | || | |||||| | ||| || || |||| | ||||||||| | ||| ||| Sbjct 105996 TGCTGCT-TGATTTGTTGCTTCAAGGTG-GCCCAGTCCCAAAGATCGGTAGGTGTAACCT 105939 Query 62581 NNNNNNNNNNATATTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCA 62636 ||||| || || || | |||| || ||| | ||||| || Sbjct 105938 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 105883 Query 62637 TATGGTCCTTCCTTCTCAGCTAG-TTTACAACTCGCCTCTAATGCACCGTAATAAATGGT 62695 || | || | || || || || | ||| | || || ||| ||| || ||||| Sbjct 105882 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 105824 Query 62696 TTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 || ||||||| |||| |||| || || || || || ||||| | | ||||| Sbjct 105823 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGG-GAGTCGAAGAG 105765 Query 62756 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 105764 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 105706 Query 62815 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 || | || || |||| ||| || || || || || || || || || | || | Sbjct 105705 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 105646 Query 62874 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62927 || | || | | ||||| | || || |||| || | | ||||| || Sbjct 105645 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 105586 Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 || | | | |||| ||| |||| ||||| || || ||||| | || | | || Sbjct 105585 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 105527 Query 62988 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 |||| | |||||| ||||| ||||| | ||| || || | || | ||||| Sbjct 105526 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 105467 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 105466 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 105407 Query 63107 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63163 || | || | | ||| | | || | ||||| || | || | | | | ||| Sbjct 105406 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCTTGATGGT--CTTGCGACCCTTGCCTTC 105350 Query 63164 TCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 | ||||| ||| | || || ||||| || |||||| | | | || Sbjct 105349 TGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGG 105290 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAAA 63280 || || | || ||||||| | ||| | | | ||| |||| || || ||||| || Sbjct 105289 GCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGAA 105233 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||| |||||||| ||||| || ||||| | | | | |||||| ||||| Sbjct 105232 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTG 105173 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || || Sbjct 105172 GTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGC 105113 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || || ||||| ||||| || | ||||| || ||||| || |||| Sbjct 105112 GAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAAC 105053 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 || | ||| |||| ||||||||| || | || || || || | || || ||||| | Sbjct 105052 TCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGT 104993 Query 63521 GGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 |||||| || | || ||| ||||| || || || || | || ||||| | | Sbjct 104992 GGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGG 104937 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | || || | || || || || || || || || || || |||||| | | | Sbjct 104936 CACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 104877 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || ||| | ||| | | || || || ||| | ||| ||||| ||||| | Sbjct 104876 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 104817 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | || || | || |||||| ||||| ||||| || ||||| | Sbjct 104816 TAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGT 104757 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 |||| || || || || | ||| | |||||| || || | ||| |||| ||| | | Sbjct 104756 GAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGA 104697 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTC 63874 | | ||| ||| | || | ||| || || ||||| || | ||| ||||| || Sbjct 104696 GACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TC 104639 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCT 63903 || || || | ||| | || ||||||| Sbjct 104638 CCGATCATAGACAATGGCAGAGTTGAGCT 104610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816308873920