Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq145 187 3e-42 seq85 84.2 3e-11 >seq145 Length=311005 Score = 187 bits (206), Expect = 3e-42 Identities = 1191/1888 (63%), Gaps = 55/1888 (3%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || || ||||||||||| | ||| | | ||||| || Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 106357 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 106356 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 106297 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 106296 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 106237 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | ||| || ||||| || ||||| || || || | ||||| || | ||| | Sbjct 106236 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 106177 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 106176 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 106117 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | ||| || | || | ||| || || || || || || | | |||| || || Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 106056 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 105997 Query 65316 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 65373 | || | |||||| | || | |||| |||| | ||||||||| | ||| ||| Sbjct 105996 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 105939 Query 65374 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 65429 ||| || || || | |||| || ||| | ||||| ||| Sbjct 105938 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 105883 Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 65488 || | || | || || || || || ||| | || || ||| ||| || ||||| Sbjct 105882 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 105824 Query 65489 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 65548 |||||||||| |||| |||| || || || | || ||||| | | ||||| Sbjct 105823 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGG-GAGTCGAAGAG 105765 Query 65549 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 65607 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 105764 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 105706 Query 65608 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 65666 || | || || |||| ||| || || || || || || || || || | || | Sbjct 105705 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 105646 Query 65667 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GC--TCATCT---ATT 65720 || | || | | ||||| | || || |||| || | | || |||| | | Sbjct 105645 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 105586 Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 || | | | |||| ||| |||| |||||||| || ||||| | || | | || Sbjct 105585 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 105527 Query 65781 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 |||| | |||||| ||||| ||||| | |||||| || | || | ||||| Sbjct 105526 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 105467 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 ||||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 105466 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 105407 Query 65900 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TT 65955 || | || | | ||| | | || | |||| | || | ||| | ||| || Sbjct 105406 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTT 105351 Query 65956 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 || ||||| ||| | || || ||||| || |||||| | | || | Sbjct 105350 CTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGG 105291 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAA 66072 | || || | || ||||||| | ||| | | | ||| |||| || || ||||| | Sbjct 105290 GGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGA 105234 Query 66073 AGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 ||||||| |||||||| ||||| || | ||| | | | | |||||| ||||| Sbjct 105233 AGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGT 105174 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||||| ||||| |||||| | | | |||| ||||| || || | ||| || | Sbjct 105173 GGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCG 105114 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | | ||||| || || ||||| ||||| || | ||||| || ||||| || ||| Sbjct 105113 CGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAA 105054 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 ||| | ||| |||| |||||| ||||| | || || || || | || || |||| Sbjct 105053 CTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAG 104994 Query 66313 TTGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 | ||||| || | || ||| ||||| || || || || | || ||||| | Sbjct 104993 TGGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATG 104938 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 || || || | ||||| || || || || ||||| || ||| |||||| | | Sbjct 104937 GCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAG 104878 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 || || ||| | ||| | || || || ||| | ||| ||||| ||||| Sbjct 104877 AAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGT 104818 Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 66548 ||||| | || || | || |||||| ||||| ||||| || ||||| Sbjct 104817 GTAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCG 104758 Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608 ||||| || || || || | ||| | |||||| || || | ||| | |||||| | Sbjct 104757 TGAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCG 104698 Query 66609 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 66666 | | | ||| ||| | || | ||| || || ||||| || | ||| ||||| | Sbjct 104697 AGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--T 104640 Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAG 66694 | || || || | ||| | |||||||| Sbjct 104639 CCCGATCATAGACAATGGCAGAGTTGAG 104612 >seq85 Length=1171154 Score = 84.2 bits (92), Expect = 3e-11 Identities = 562/915 (61%), Gaps = 58/915 (6%) Strand=Plus/Plus Query 35851 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 35910 || |||||| || ||||||||| || | ||||| || ||||| || || || || || Sbjct 1031002 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 1031061 Query 35911 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAA 35970 | | || || || |||||||| |||||||| ||| || ||| | || | Sbjct 1031062 GGCAAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 1031120 Query 35971 TCCCAATTCAGAA-ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCAC 36029 | || | || | || | ||| ||||| || || || ||| ||||||| || Sbjct 1031121 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 1031180 Query 36030 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 36089 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 1031181 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 1031240 Query 36090 CCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 36149 | || || || |||| | |||| || | || || ||| || || | Sbjct 1031241 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 1031300 Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| | || || || ||| ||| ||||| ||||| | || | |||||||| | Sbjct 1031301 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 1031360 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | || || || ||||| || |||||||| || | ||| ||||| || || ||||| || | Sbjct 1031361 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 1031420 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCAC 36326 | ||||| || || || || || |||||||||| || | || | | | | | Sbjct 1031421 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCT 1031480 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA------------------ 36368 | || || ||||| || ||||| ||||||||||| || | Sbjct 1031481 TATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTAGATCGT 1031540 Query 36369 --------------------------CACAAGGCA------TTGTCTCTATAGCATTAAA 36396 ||| ||||| | ||||| |||||||| || Sbjct 1031541 GTTAGAATATGGCACTGTGCTAATGACACGAGGCAACTTACTGGTCTCGATAGCATTGAA 1031600 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 |||||| | || | || |||| ||||| || || | ||| || | || Sbjct 1031601 CAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATGAGAAGGGAGTATGTCTC 1031660 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || ||||| || || ||||| || |||||||| || | |||||| | | ||| Sbjct 1031661 TGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACCTG 1031720 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || ||| | ||||| || | || || || || ||||||||| || || || Sbjct 1031721 GACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCGAA 1031780 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT---TTATTCCAATC 36633 || || | || || | ||| ||| | || | | ||| || ||||| || Sbjct 1031781 GAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAGTC 1031840 Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 | || ||| || || | ||| | |||||| | ||||| ||||| ||||||||||| || Sbjct 1031841 GTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTCTT 1031900 Query 36694 ATACATATTCCAGAT 36708 ||||| | |||||| Sbjct 1031901 GTACATCTGCCAGAT 1031915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171450745760