Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq145 221 2e-52 seq85 109 8e-19 >seq145 Length=311005 Score = 221 bits (244), Expect = 2e-52 Identities = 1190/1880 (63%), Gaps = 39/1880 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||| ||||||||||| | ||| | | ||||| || Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 106357 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 106356 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 106297 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 106296 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 106237 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | ||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 106236 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 106177 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 106176 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 106117 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | ||| || | || | ||| || || || ||||| || | | || || || Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||| || || ||||||||||| || || | ||||| || | ||||||| Sbjct 106056 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 105997 Query 79195 T-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 | || | |||||| | || | | |||| ||||||||||| | || ||| || Sbjct 105996 TGCTGCT-TGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT 105938 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| | ||| ||||| || || | ||| || ||| |||||| || |||| Sbjct 105937 CCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGT 105878 Query 79314 TCCTTCCTTTTCGGCTAATTC-ACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGA 79372 || | || | || | || ||| | || || || ||| || ||||| |||| Sbjct 105877 ACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGTCTCGA 105819 Query 79373 AAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG-AATA 79431 | |||| ||||||||| || || || | || ||||| | | ||||| | Sbjct 105818 AGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGG-GAGTCGAAGAGCTAGG 105760 Query 79432 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATT 79491 || | || || | || || ||||||| | | |||||||| || | ||| | || Sbjct 105759 AAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTT 105701 Query 79492 TC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTAT 79550 | || || |||| ||| || || || || || || || || || | ||| | || | Sbjct 105700 GCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAC 105641 Query 79551 TACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT------ACAAA 79604 || | | ||||| | || || |||| || | | ||||| || || | Sbjct 105640 AACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTA 105581 Query 79605 CATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATT 79663 | | || | ||| |||| |||||||| || ||||| | || | | || |||| Sbjct 105580 AGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACAGTATT 105522 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 | ||| || |||||||| || | ||||| || | || | |||||||||| Sbjct 105521 CAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCT 105462 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 || ||| || |||||||| || || ||||| || | || || || | || | || | Sbjct 105461 TTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGA 105402 Query 79784 TAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTT 79839 || | | ||| | | || | |||| | || | |||| | ||| |||| Sbjct 105401 GGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTTCTGCC 105346 Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||||| | ||| | || || ||||| || ||||||| | | || || || Sbjct 105345 TCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCAC 105286 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 |||| || ||||||| | ||| |||| | || || || ||||| |||||||| Sbjct 105285 TCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCT 105226 Query 79960 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 80019 |||||||| ||||| || ||||| | | | | ||||| ||||| |||||| Sbjct 105225 GGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTT 105166 Query 80020 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 ||||| |||||| | | | ||||| ||||| || || | ||| || || | | | Sbjct 105165 CGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCA 105106 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 || || || || ||||| ||||| || | ||||| || ||||| || |||||| | | Sbjct 105105 CCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGC 105046 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 || |||| |||||| ||||| | || || || || | || || |||| ||||||| Sbjct 105045 ATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGG 104986 Query 80200 ATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 80255 || | || ||| ||||| || || || || | || ||||| | || || Sbjct 104985 ATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGT 104930 Query 80256 TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 || | ||||| || || || || || || || || |||||| | | || || Sbjct 104929 CTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGA 104870 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 ||| | ||| | || || || ||| | ||| ||||| ||||| ||||| | Sbjct 104869 AGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTA 104810 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 || |||| || |||||| ||||| ||||| || ||||| ||||| || Sbjct 104809 CTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACC 104750 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 || || || | ||| | |||||| || || | ||| | |||||| | | | Sbjct 104749 GACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAG 104690 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCG 80553 | ||| ||| | || | ||| || || ||||| || | ||| ||||| || || || Sbjct 104689 AAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TCCCGATCA 104632 Query 80554 TAAATAATAACCGAGTTGAG 80573 || | ||| | |||||||| Sbjct 104631 TAGACAATGGCAGAGTTGAG 104612 >seq85 Length=1171154 Score = 109 bits (120), Expect = 8e-19 Identities = 300/457 (66%), Gaps = 2/457 (0%) Strand=Plus/Plus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 || |||||| || ||||||||| || | ||||| || ||||| || || || ||||| Sbjct 1031002 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 1031061 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772 | | || || || |||||||| || || || |||| || ||| | || | Sbjct 1031062 GGCAAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 1031120 Query 49773 TCCCAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCAC 49831 | || | || | || | ||| ||||| || || || ||| ||||||| || Sbjct 1031121 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 1031180 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 1031181 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 1031240 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951 | || || || |||| | || | || | || || |||| || || | Sbjct 1031241 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 1031300 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| | || || || ||| ||| ||||| ||||| | || || |||||||| | Sbjct 1031301 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 1031360 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || || || ||||| || |||||||| || | ||| ||||| || || ||||| || | Sbjct 1031361 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 1031420 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 | |||||||| || || || |||||||||||||| || Sbjct 1031421 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAG 1031457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267327548960