Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq145 143 4e-29 >seq145 Length=311005 Score = 143 bits (158), Expect = 4e-29 Identities = 1111/1787 (62%), Gaps = 37/1787 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || |||||||||| ||| || || | ||||| || ||||||||||| || || ||| Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919 || | |||| || || ||||||||||| | ||| |||| | ||||| || Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAG-TTGGATCCTTCAT 106358 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||| || |||||||| || || ||||||||||| || | || |||||||| | | Sbjct 106357 GTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAAC 106298 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 ||| || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 106297 GATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAAT 106238 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 || | ||| || ||||| || ||||| || || || | || || || | || Sbjct 106237 ATTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGA 106178 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| | | ||| | | | | | | ||| ||||| ||||| ||||| || Sbjct 106177 CCAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACC 106118 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || ||| || | || | ||| || || || || || || | |||| || || Sbjct 106117 AGCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCC 106058 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | |||||| || ||||| |||||||| || || | | ||| || | |||||| Sbjct 106057 AAGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACC 105998 Query 71277 ATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNN 71335 || || | ||||| | || | | |||| | ||||||||| | ||| ||| Sbjct 105997 GTGCTGCT-TGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 105939 Query 71336 NNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATG 71395 || | ||| || ||| | ||||| ||||| | Sbjct 105938 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAG 105879 Query 71396 GTCCTTCTTTTTCGGCTAGTTC-ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCG 71454 || | | | || || || ||| | || || || | | || ||||| ||| Sbjct 105878 TACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGTCTCG 105820 Query 71455 AAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG-AAT 71513 || |||| ||||||||| || || || || || ||||| | | ||||| | Sbjct 105819 AAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGG-GAGTCGAAGAGCTAG 105761 Query 71514 AAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAAT 71573 || | || || | || || || |||| | | ||||||||||| | ||| | | Sbjct 105760 GAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCT 105702 Query 71574 TTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTA 71632 | | || || |||| ||| || || || || || || || || || | || | || | Sbjct 105701 TGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGA 105642 Query 71633 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAACACGT 71692 || | | ||||| | || || |||| || | || ||||| || |||| Sbjct 105641 CAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGT 105582 Query 71693 TCAAG--------GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 ||| |||| ||| |||| |||||||| || ||||| | || | || Sbjct 105581 --AAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTA 105524 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 || | || || ||||| ||||| | |||||| || | || | |||||||| Sbjct 105523 TTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACT 105464 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 |||| ||| || |||||||| || || || || || | || || || | || | || Sbjct 105463 CTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTC 105404 Query 71865 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTC 71920 | || | | ||| | | || | |||| | || ||||| | ||| |||| Sbjct 105403 GAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTTCTG 105348 Query 71921 TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGAC 71980 ||||| | ||| | || || ||||| || || ||| | | || || | Sbjct 105347 CCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGC 105288 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGAT 72040 | || || || ||||||| || ||| |||| | | || || ||||| ||||||| Sbjct 105287 ACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGAT 105228 Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 72100 | |||||||| ||||| || ||||| | | | | ||||| ||||| |||| Sbjct 105227 CTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCT 105168 Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160 || ||||| |||||| | | | ||||| ||||| || || | ||| || || | | Sbjct 105167 TTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAG 105108 Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220 | || || || || ||||| ||||| || | ||||| || ||||| || |||||| | Sbjct 105107 CACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGA 105048 Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280 ||| |||| |||||| ||||| || || || || | || || |||| |||||| Sbjct 105047 GCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC 104988 Query 72281 GAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 72340 | || || | ||||| || || || || | || ||||| | || || | Sbjct 104987 GGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCT 104928 Query 72341 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 72400 | | ||||| || || || || ||||| || ||| |||||| | | || || || Sbjct 104927 TGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAG 104868 Query 72401 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 72460 | | ||| | || || || ||| | ||| ||||| ||||| ||||| | | Sbjct 104867 AGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACT 104808 Query 72461 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTAT---ATCCCATTGATGTATTC 72517 | |||| || |||||| ||||| ||||| || || ||||| ||| || | Sbjct 104807 TGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA---ATAC 104751 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | || || || | ||| | ||| || || || | ||| | |||||| Sbjct 104750 CGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTG 104704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137824164640