Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq145 125 7e-24
seq85 91.5 1e-13
seq95 87.8 2e-12
>seq145
Length=311005
Score = 125 bits (138), Expect = 7e-24
Identities = 425/647 (66%), Gaps = 19/647 (3%)
Strand=Plus/Minus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
||||||||| |||||||| || || || || |||| ||||| | || || |||
Sbjct 105358 CTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 105299
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356
| |||||| ||||||| ||||||||||| || |||| | || | || ||| || | ||
Sbjct 105298 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCT-TCTCAACACGCT 105240
Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGG 148416
|||| || ||||| || |||| | || | | ||||||||||| | |||||
Sbjct 105239 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 105180
Query 148417 CACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGA 148473
|| | | |||| ||||| | || ||| || || |||||||| |||||||
Sbjct 105179 TTCC---GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGA 105123
Query 148474 TGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGC-ATG 148529
||| | | | || || | | || || || || || |||| | | || ||
Sbjct 105122 GGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATC-TGGCTGTG 105064
Query 148530 CTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGATTCAAT 148588
| || ||||| || | ||| |||| ||| | |||| ||||||||| ||||
Sbjct 105063 TTGTTGAAAACTCGGAGCATAGG-AACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAAT 105005
Query 148589 TTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAG 148647
| | ||||| || ||| || | ||||||||| ||||| || || | | || |
Sbjct 105004 GTAAGCTCCAGTGGCACGGATTCTGTG-GACATTCAGACCGATACCTCCAGCATTCTTGG 104946
Query 148648 ATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGT 148707
| |||||||||||| ||||| || | || || |||| ||||||||||| | ||||
Sbjct 104945 AGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGT 104886
Query 148708 TAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGAC 148767
| || | |||| || || | ||| | | |||| | | ||| || ||||||
Sbjct 104885 CGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAG 104826
Query 148768 TAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATG 148826
||||| || || | |||| | ||| || | || | |||||||| || || ||
Sbjct 104825 ACGCGTGTGTAAAGTAC-TTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATA 104767
Query 148827 TCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873
||||| || ||||| | ||| || | ||| | ||||||||| ||
Sbjct 104766 TCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 104720
>seq85
Length=1171154
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852
||||| || | ||||| ||||| | |||||| ||| |||||||| | |||||
Sbjct 580641 ACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAATGTCAAGTCG 580700
Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912
||||| ||||| || || || ||||||||||| ||| | | || | || ||| ||
Sbjct 580701 AAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATCTTCGCCGGAAAG 580760
Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972
||||||||||||| | | | | ||| || ||||| || || || || ||| ||||
Sbjct 580761 CAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACTCTCCAC 580820
Query 26973 CTGGTCCT 26980
|||||||
Sbjct 580821 TTGGTCCT 580828
>seq95
Length=967449
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864
|| ||| | || |||| || ||| || ||||| | ||||| ||||| |||
Sbjct 168764 ATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGAC 168705
Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924
|| || || || || ||||| |||||| | ||||| | || |||||| ||||||||||||
Sbjct 168704 AAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAGCAACTCGAAGAT 168645
Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| | | | || |||||| ||||| || || || || ||| | ||||| |||||
Sbjct 168644 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCATCTAGTCCT 168589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478661418742080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |