Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq145 125 7e-24 seq85 91.5 1e-13 seq95 87.8 2e-12 >seq145 Length=311005 Score = 125 bits (138), Expect = 7e-24 Identities = 425/647 (66%), Gaps = 19/647 (3%) Strand=Plus/Minus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 ||||||||| |||||||| || || || || |||| ||||| | || || ||| Sbjct 105358 CTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 105299 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356 | |||||| ||||||| ||||||||||| || |||| | || | || ||| || | || Sbjct 105298 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCT-TCTCAACACGCT 105240 Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGG 148416 |||| || ||||| || |||| | || | | ||||||||||| | ||||| Sbjct 105239 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 105180 Query 148417 CACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGA 148473 || | | |||| ||||| | || ||| || || |||||||| ||||||| Sbjct 105179 TTCC---GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGA 105123 Query 148474 TGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGC-ATG 148529 ||| | | | || || | | || || || || || |||| | | || || Sbjct 105122 GGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATC-TGGCTGTG 105064 Query 148530 CTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGATTCAAT 148588 | || ||||| || | ||| |||| ||| | |||| ||||||||| |||| Sbjct 105063 TTGTTGAAAACTCGGAGCATAGG-AACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAAT 105005 Query 148589 TTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAG 148647 | | ||||| || ||| || | ||||||||| ||||| || || | | || | Sbjct 105004 GTAAGCTCCAGTGGCACGGATTCTGTG-GACATTCAGACCGATACCTCCAGCATTCTTGG 104946 Query 148648 ATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGT 148707 | |||||||||||| ||||| || | || || |||| ||||||||||| | |||| Sbjct 104945 AGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGT 104886 Query 148708 TAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGAC 148767 | || | |||| || || | ||| | | |||| | | ||| || |||||| Sbjct 104885 CGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAG 104826 Query 148768 TAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATG 148826 ||||| || || | |||| | ||| || | || | |||||||| || || || Sbjct 104825 ACGCGTGTGTAAAGTAC-TTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATA 104767 Query 148827 TCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873 ||||| || ||||| | ||| || | ||| | ||||||||| || Sbjct 104766 TCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGG 104720 >seq85 Length=1171154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||| || | ||||| ||||| | |||||| ||| |||||||| | ||||| Sbjct 580641 ACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAATGTCAAGTCG 580700 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| ||||| || || || ||||||||||| ||| | | || | || ||| || Sbjct 580701 AAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATCTTCGCCGGAAAG 580760 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||||||||||| | | | | ||| || ||||| || || || || ||| |||| Sbjct 580761 CAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGAGTCCACTCTCCAC 580820 Query 26973 CTGGTCCT 26980 ||||||| Sbjct 580821 TTGGTCCT 580828 >seq95 Length=967449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 || ||| | || |||| || ||| || ||||| | ||||| ||||| ||| Sbjct 168764 ATTACCCTAGAGGTAGAGTCTTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGAC 168705 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || || ||||| |||||| | ||||| | || |||||| |||||||||||| Sbjct 168704 AAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAGCAACTCGAAGAT 168645 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | | | | || |||||| ||||| || || || || ||| | ||||| ||||| Sbjct 168644 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCATCTAGTCCT 168589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661418742080