Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq145 343 4e-89 seq116 86.0 2e-11 >seq145 Length=311005 Score = 343 bits (380), Expect = 4e-89 Identities = 1172/1798 (65%), Gaps = 49/1798 (3%) Strand=Plus/Plus Query 363386 ATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATT 363444 ||| ||| |||| ||||| | |||| ||| ||||| |||| || || | || | ||| Sbjct 104653 ATACTTT-GGATTCAAGACTCTTGAGAGATCATACCT-TCTCCGTCTCGAGGGCAAGATT 104710 Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 | ||||| || || || ||| | ||| | || ||| | ||||| || | ||| || Sbjct 104711 GCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATATT 104770 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGC 363562 || || || || ||||| || || | || | | ||| || || ||||| | | Sbjct 104771 GAGAGTGCTATCGAGACATACAA--TTTAATGTCCAGCAAGTACTTTACACACGCGTCTC 104828 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 |||| | | || || || | | |||| | ||||| ||||| | | | | Sbjct 104829 CAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACA 104888 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 ||||||| || ||||| || || | || || || |||| |||||| | || |||| Sbjct 104889 TGAAGGAGGACAGTATCGACGGGATTTACGATACTCTCAAGACTTGTGCCATGATCTCCA 104948 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG-TTACATT 363741 ||||||| || || || ||| | |||||| | ||||| || || ||||||| Sbjct 104949 AGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGC-CACTGGAGCTTACATT 105007 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 |||||| || |||| || || | ||||| ||||| || || || |||| || Sbjct 105008 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 105067 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || || || || |||||||||||| |||||| || || || || || || |||||| Sbjct 105068 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 105127 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || || || ||| | |||||||| ||||| ||||| || ||| ||||| |||||| Sbjct 105128 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAA 105187 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | || || || ||||| ||||| || || ||| || | || | || |||||||| || Sbjct 105188 GTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTT 105247 Query 363982 GAGGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 ||| |||||| ||| |||| | ||||| |||| || || |||||| | Sbjct 105248 GAG------AAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCT 105301 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 ||||| | |||||||| | || ||||| || || ||||| || | || || |||| | Sbjct 105302 GATGTTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGT 105361 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || ||||| || || |||||||| |||| ||||| | || |||| | ||||| Sbjct 105362 CGCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACC 105421 Query 364156 GGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 |||| ||||| | ||| | ||||| ||| | |||||||| ||| || ||| || |||| Sbjct 105422 GGAA-ACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCT 105480 Query 364215 TGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 |||||| | || |||| ||| || || || ||||| |||||||| || || |||| Sbjct 105481 TGGTACCA-TCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATACTGTGCACCTGACG 105539 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATG 364327 || || || |||||| | || || | || || || | | || ||| |||| Sbjct 105540 AGGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGTCAACCAAAATGATG 105599 Query 364328 GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCA-ATCTCG- 364384 | | | ||| ||| | ||| | || || || || | | | || | | || | Sbjct 105600 GCAGCTACGACTTTCAGAAGCTTCACGATGT---CTGCCAGGTTGTCGTGAAGAACTTGA 105656 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGT 364443 ||||| | ||||||| || || || || |||| || || || | | ||| | ||| Sbjct 105657 ACAAGATCATCGACATCAACTACTACCCTGTTCCCGAGGCACGCAAGAGC-AATTTCCGT 105715 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT-GATGCTCAAGAT 364502 || | || |||| | ||||||| ||||| ||||| || || || | | | || | | Sbjct 105716 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGA-CT 105774 Query 364503 GGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 |||| || || || || || ||| |||| ||||||| || || || || Sbjct 105775 CCCATTCGAGTCACCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCA 105834 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 || || ||||| | || ||| | ||||| | || | ||| || || || Sbjct 105835 CGCTGCCTTGACTTCATCTGTTGAGCTTGCAAAGCAGCATGGTACTTACGAGACATACGA 105894 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 || ||||| ||| || ||| | |||| | ||| | ||||| || || || | | Sbjct 105895 AGGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGTGGAAGGTTACACCTACCGA 105954 Query 364683 CCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---T 364738 | ||| |||||| || | | | ||| | ||| |||| ||| ||| ||| | Sbjct 105955 TCTTTGGGACTGGGCCACCTTGAAGCAACAA-ATCAAGCAGCACGGTCTTCGTAACAGTT 106013 Query 364739 CCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGT 364798 |||||| || || ||||| || || ||| || ||||| || |||||||| Sbjct 106014 TGCTCGTT---GCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGT 106070 Query 364799 GCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGG 364858 | ||||| || | ||| ||| | || || || || || | | || ||||| | | Sbjct 106071 GTTTCGAGCCATACACATCCAACATCTACTCCCGACGTGTCTTGGCTGGTGAATTCCAAG 106130 Query 364859 TAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGA 364918 | ||||| | | | ||||||||| ||| || || ||| || | ||||| Sbjct 106131 TCGTTAACCCTTGGTTGTTGAAGGATCTTGTCGATATGGGTCTCTGGTCAGATAACATGA 106190 Query 364919 AGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATC 364978 ||||| ||||||||||| | ||||| | || || | || |||| | ||| Sbjct 106191 AGAACCGTATCATCGCCGATGGAGGTTCCATCCAAAATGTCCCTAATATTCCTGCCGATA 106250 Query 364979 TGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGG 365038 | ||| || ||||||| || || ||||| || ||| ||| || || || | ||||| | Sbjct 106251 TCAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTG 106310 Query 365039 CCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAA 365098 | ||||| ||||| || ||| ||| ||| ||| | ||| | ||||| | |||| Sbjct 106311 CTGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAA 106370 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | | |||| | || ||||| ||| || ||||| | ||||| ||||| || Sbjct 106371 CTATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGG 106428 >seq116 Length=2555478 Score = 86.0 bits (94), Expect = 2e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 111423 AAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCG-ACAA 111481 || || |||||||| || ||||| || || | ||| ||||| || || |||||| || Sbjct 797563 AAGATCTGGGATGGCAACGGATCGCGCGAATATCTCGATTCGGTCGGG-TTGTCGCACCG 797621 Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 || || |||||||| ||||| || ||||| ||||| ||| | || ||||||||||| || Sbjct 797622 CGCAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATA 797681 Query 111542 C 111542 | Sbjct 797682 C 797682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350861328248