Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq85 86.0 4e-12
>seq85
Length=1171154
Score = 86.0 bits (94), Expect = 4e-12
Identities = 151/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||||||||||| ||| ||||| |||||| || || ||||| || |||| || |
Sbjct 581288 ACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCC 581229
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || || || || || ||||| ||||| | || || |||| |||| || || ||
Sbjct 581228 ATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGGATACCCTCCTT 581169
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTA 38279
||| || || ||| || || | || || || | || |||||||| | |||
Sbjct 581168 ATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGAC--TCAACTTCCAGAGTA 581111
Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || ||||| || || ||||| ||||||||
Sbjct 581110 ATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||||||||| |||||| || || || ||||||||||| ||| | || ||
Sbjct 581053 ACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCA 580994
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||| ||||| || || || || | || || |||| |||| || || ||||||
Sbjct 580993 AGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 580934
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| ||| || || | | |||||| ||| || || | ||| || || ||
Sbjct 580933 ATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTT 580874
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| |||| || || ||||| ||||||||
Sbjct 580873 CCGGTCAGAGTCTTGACGAAAATCTGCAT 580845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946530524284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |