Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq85 86.0 4e-12 >seq85 Length=1171154 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||||||||| ||| ||||| |||||| || || ||||| || |||| || | Sbjct 581288 ACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCC 581229 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || || || || ||||| ||||| | || || |||| |||| || || || Sbjct 581228 ATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGGATACCCTCCTT 581169 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTA 38279 ||| || || ||| || || | || || || | || |||||||| | ||| Sbjct 581168 ATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGAC--TCAACTTCCAGAGTA 581111 Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || ||||| || || ||||| |||||||| Sbjct 581110 ATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||||||||| |||||| || || || ||||||||||| ||| | || || Sbjct 581053 ACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCA 580994 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| ||||| || || || || | || || |||| |||| || || |||||| Sbjct 580993 AGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 580934 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||| || || | | |||||| ||| || || | ||| || || || Sbjct 580933 ATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTT 580874 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| || || ||||| |||||||| Sbjct 580873 CCGGTCAGAGTCTTGACGAAAATCTGCAT 580845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946530524284