Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq145 205 1e-47 seq85 100 4e-16 >seq145 Length=311005 Score = 205 bits (226), Expect = 1e-47 Identities = 1193/1888 (63%), Gaps = 55/1888 (3%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || || ||||||||||| | ||| | | ||||| || Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 106357 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | Sbjct 106356 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 106297 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 106296 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 106237 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | ||| || ||||| || ||||| || || || | ||||| || | ||| | Sbjct 106236 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 106177 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 106176 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 106117 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | ||| || | || | ||| || || || || || || | | |||| || || Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 106056 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 105997 Query 62327 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384 | || | |||||| | || | |||| |||| | ||||||||| | ||| ||| Sbjct 105996 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 105939 Query 62385 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 62440 ||| || || || | |||| || ||| | ||||| ||| Sbjct 105938 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 105883 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499 || | || | || || || || || ||| | || || ||| ||| || ||||| Sbjct 105882 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 105824 Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559 |||||||||| |||| |||| || || || | || ||||| | | ||||| Sbjct 105823 CTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGG-GAGTCGAAGAG 105765 Query 62560 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 105764 CTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 105706 Query 62619 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 || | || || |||| ||| || || || || || || || || || | || | Sbjct 105705 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 105646 Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62731 || | || | | ||||| | || || |||| || | | ||||| || Sbjct 105645 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 105586 Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 || | | | |||| ||| |||| |||||||| || ||||| | || | | || Sbjct 105585 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 105527 Query 62792 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 |||| | |||||| ||||| ||||| | |||||| || | || | ||||| Sbjct 105526 GTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 105467 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 ||||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 105466 ACTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 105407 Query 62911 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TT 62966 || | || | | ||| | | || | |||| | || | ||| | ||| || Sbjct 105406 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTT 105351 Query 62967 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 || ||||| ||| | || || ||||| || |||||| | || || | Sbjct 105350 CTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGG 105291 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATAA 63083 | || || | || ||||||| | ||| | | | ||| |||| || || ||||| | Sbjct 105290 GGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATGA 105234 Query 63084 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63143 ||||||| |||||||| ||||| || ||||| | | | | |||||| ||||| Sbjct 105233 AGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGT 105174 Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || | Sbjct 105173 GGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCG 105114 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | | | ||||| || || ||||| ||||| || | ||||| || ||||| || ||| Sbjct 105113 CGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAA 105054 Query 63264 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCAC 63323 ||| | ||| |||| |||||| ||||| | || || || || | || || |||| Sbjct 105053 CTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAG 104994 Query 63324 TGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 ||||||| || | || ||| ||||| || || || || | || ||||| | Sbjct 104993 TGGCACGGATTCTGTGGAC--ATT--CAGACCGATACCTCCAGCATTCTTGGAGATCATG 104938 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 || || || | ||||| || || || || ||||| || ||| |||||| | | Sbjct 104937 GCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAG 104878 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || || ||| | ||| | || || || ||| | ||| ||||| ||||| Sbjct 104877 AAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGT 104818 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 63559 ||||| | || || | || |||||| ||||| ||||| || ||||| Sbjct 104817 GTAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCG 104758 Query 63560 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63619 ||||| || || || || | ||| | |||||| || || | ||| | |||||| | Sbjct 104757 TGAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCG 104698 Query 63620 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGT 63677 | | | ||| ||| | || | ||| || || ||||| || | ||| ||||| | Sbjct 104697 AGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--T 104640 Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAG 63705 | || || || | ||| | |||||||| Sbjct 104639 CCCGATCATAGACAATGGCAGAGTTGAG 104612 >seq85 Length=1171154 Score = 100 bits (110), Expect = 4e-16 Identities = 568/917 (62%), Gaps = 62/917 (7%) Strand=Plus/Plus Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 || |||||| || ||||||||| || | ||||| || ||||| || || || || || Sbjct 1031002 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 1031061 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473 | | || || || |||||||| |||||||| |||| || ||| | || | Sbjct 1031062 GGCAAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 1031120 Query 32474 TCCCAATTCAGAA-ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCAC 32532 | || | || | || | ||| ||||| || || || ||| ||||||| || Sbjct 1031121 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 1031180 Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 1031181 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 1031240 Query 32593 CCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 32650 | || || || |||| |||| |||| || | || || ||| || || Sbjct 1031241 CAGCCTCGGTAATAACG--TCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGA 1031298 Query 32651 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 |||| | || || || ||| ||| ||||| ||||| | || | |||||||| Sbjct 1031299 GAACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGA 1031358 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770 || || || || ||||| || |||||||| || | ||| ||||| || || ||||| || Sbjct 1031359 GAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACC 1031418 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 32827 || ||||| || || || || || |||||||||| || | || | | | | | Sbjct 1031419 GGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTC 1031478 Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA---------------- 32871 | || || ||||| || ||||| ||||||||||| || | Sbjct 1031479 CTTATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTAGATC 1031538 Query 32872 ----------------------------CACAAGGCA------TTGTCTCTATAGCATTA 32897 ||| ||||| | ||||| |||||||| Sbjct 1031539 GTGTTAGAATATGGCACTGTGCTAATGACACGAGGCAACTTACTGGTCTCGATAGCATTG 1031598 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || |||||| | || | || |||| ||||| || || | ||| || | Sbjct 1031599 AACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATGAGAAGGGAGTATGTC 1031658 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || ||||| || || ||||| || ||||||||||| | |||||| | | | Sbjct 1031659 TCTGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 1031718 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || ||| | ||||| || | || || || || ||||||||| || || Sbjct 1031719 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 1031778 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAA 33134 || || || | || || | ||| ||| | || || | ||| || ||||| Sbjct 1031779 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 1031838 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 || | || ||| || || | ||| | |||||| | ||||| ||||| ||||||||||| Sbjct 1031839 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 1031898 Query 33195 TTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 1031899 TTGTACATCTGCCAGAT 1031915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630701054400