Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq85 123 3e-23
>seq85
Length=1171154
Score = 123 bits (136), Expect = 3e-23
Identities = 355/536 (66%), Gaps = 24/536 (4%)
Strand=Plus/Plus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
|||||||||| ||||||||| || | || || || ||||| || |||||||| |
Sbjct 1031005 CATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGC 1031064
Query 92850 CAAAGATATCGAATTCACTA-GT-GATTGGATTCTTGGCGTTATAATACTTTTC---ACC 92904
| ||| || | || | || || ||| || || || |||||||| || |||
Sbjct 1031065 AAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACC 1031124
Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964
|| | | | | | | | |||||| || || || ||||| || ||||||| ||
Sbjct 1031125 GAG-AGCGAGGAGCAGA--CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGC 1031181
Query 92965 ATTCATTCCTAGAAGACGTACAGGTA-GAGCGTCGGTCAAGAAATCTTTCTCGATTACAA 93023
||||| || |||||| | ||||| | |||| || |||||||| |||| |||||| |||
Sbjct 1031182 GTTCATGCCGAGAAGA-GCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 1031240
Query 93024 CGGCTTCTTTCAAGATTTCTATTACTC--TACTAT-TTGG----TGGTTTTTGTACGACA 93076
| || || | | | ||| ||| | || |||| ||||| || || |
Sbjct 1031241 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 1031300
Query 93077 TAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136
||| | ||| ||||||||||| || | ||||||||| || || || | |||
Sbjct 1031301 -------ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCG 1031353
Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196
||| ||| || | |||||| | ||| || || ||||| | ||| ||||| || || ||
Sbjct 1031354 TTGGAGAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAAT 1031413
Query 93197 CTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTT 93256
||| || || || ||||| || || || ||||| || || | ||| | || || |
Sbjct 1031414 GAACCGGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTA 1031473
Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
| | ||| ||||||| ||| ||||| ||||| || ||||| || || ||
Sbjct 1031474 GAGTCCTTATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 1031529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556859658435360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |