Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq85 123 3e-23 >seq85 Length=1171154 Score = 123 bits (136), Expect = 3e-23 Identities = 355/536 (66%), Gaps = 24/536 (4%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| ||||||||| || | || || || ||||| || |||||||| | Sbjct 1031005 CATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGC 1031064 Query 92850 CAAAGATATCGAATTCACTA-GT-GATTGGATTCTTGGCGTTATAATACTTTTC---ACC 92904 | ||| || | || | || || ||| || || || |||||||| || ||| Sbjct 1031065 AAGAGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACC 1031124 Query 92905 GATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964 || | | | | | | | |||||| || || || ||||| || ||||||| || Sbjct 1031125 GAG-AGCGAGGAGCAGA--CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGC 1031181 Query 92965 ATTCATTCCTAGAAGACGTACAGGTA-GAGCGTCGGTCAAGAAATCTTTCTCGATTACAA 93023 ||||| || |||||| | ||||| | |||| || |||||||| |||| |||||| ||| Sbjct 1031182 GTTCATGCCGAGAAGA-GCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 1031240 Query 93024 CGGCTTCTTTCAAGATTTCTATTACTC--TACTAT-TTGG----TGGTTTTTGTACGACA 93076 | || || | | | ||| ||| | || |||| ||||| || || | Sbjct 1031241 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 1031300 Query 93077 TAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCA 93136 ||| | ||| ||||||||||| || | ||||||||| || || || | ||| Sbjct 1031301 -------ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCG 1031353 Query 93137 TTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA 93196 ||| ||| || | |||||| | ||| || || ||||| | ||| ||||| || || || Sbjct 1031354 TTGGAGAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAAT 1031413 Query 93197 CTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTT 93256 ||| || || || ||||| || || || ||||| || || | ||| | || || | Sbjct 1031414 GAACCGGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTA 1031473 Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 | | ||| ||||||| ||| ||||| ||||| || ||||| || || || Sbjct 1031474 GAGTCCTTATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 1031529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859658435360