Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq85 219 8e-52 seq145 190 4e-43 >seq85 Length=1171154 Score = 219 bits (242), Expect = 8e-52 Identities = 365/516 (71%), Gaps = 11/516 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 |||||||||||||||||||| |||||||| | | |||||| | | ||| | || Sbjct 1031529 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 1031470 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| || | || || |||||| |||| || ||||| ||||||||||| || | ||| Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGA 42811 ||||| || |||||| | ||| || | ||| |||||| || || |||||||| ||||| Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTG-GTCTGATGCCAGGTCTTACCTTCTCCAACGA 1031351 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | | ||||| || || || | ||||||||||||||| ||||||| ||| Sbjct 1031350 GCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCA 1031294 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | | | || || ||| | |||| | | | || || ||||| || ||||| Sbjct 1031293 CTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 1031234 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACC 42990 |||| | |||||| | || | | || ||| ||| | || ||||||||||| | Sbjct 1031233 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTG-CTCTTCTCGGCATGAACGCTGCTT 1031175 Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-AG 43048 | ||| |||| ||||| ||| |||||| || | ||| || | | ||| | || Sbjct 1031174 TGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAG 1031116 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | | ||||| | | ||| |||||||| |||||||||||||| | | || || Sbjct 1031115 AAGTAT-TACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAA 1031057 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||| ||||||||||| |||||||||||||| Sbjct 1031056 GACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 1031021 >seq145 Length=311005 Score = 190 bits (210), Expect = 4e-43 Identities = 480/719 (67%), Gaps = 17/719 (2%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745 |||| ||| || || || ||||| || || || ||| | || ||||| ||||||| Sbjct 105561 GCCAAGTTACAAACAGCGACCTCGTC--AGGTGCACAGTATTCAACTATCTCTGTGCAGA 105504 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 | || || |||||| || |||| || ||||| ||| |||||| || |||| Sbjct 105503 GATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCT 105444 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || ||||||||| || || |||||| | || ||| || | Sbjct 105443 TGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCT 105384 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||||| ||| ||||| ||||||| ||||||||||| || || |||| Sbjct 105383 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCT 105324 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 | || ||| || | || || | || ||||||||| |||||||| || ||| Sbjct 105323 CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCC 105264 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | || || | || ||||||||| || || ||||| || || | ||||| Sbjct 105263 ATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGA 105204 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | || ||| || |||||| | || || | || ||||||| Sbjct 105203 GATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGA 105144 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || ||||||| ||||| | ||||| |||| || || || ||||| || || |||| Sbjct 105143 CATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCT 105084 Query 245166 GGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 ||| || ||| ||| | | | |||||| | || || |||| || || ||||| || Sbjct 105083 GGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGA 105026 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280 || ||||| ||||| ||||| || || || | | || | ||| ||||||| Sbjct 105025 GTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATTCTG-TGGACATTCA 104970 Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || | ||||||||| | ||| || |||||| || || || | Sbjct 104969 GACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCC 104910 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 | || || |||||| |||||||| || || ||||| || || || | | ||||| || Sbjct 104909 CGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAG-TTGTGCTTGTGG 104852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337264104640