Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq85 219 8e-52
seq145 190 4e-43
>seq85
Length=1171154
Score = 219 bits (242), Expect = 8e-52
Identities = 365/516 (71%), Gaps = 11/516 (2%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
|||||||||||||||||||| |||||||| | | |||||| | | ||| | ||
Sbjct 1031529 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 1031470
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|||| || | || || |||||| |||| || ||||| ||||||||||| || | |||
Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGA 42811
||||| || |||||| | ||| || | ||| |||||| || || |||||||| |||||
Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTG-GTCTGATGCCAGGTCTTACCTTCTCCAACGA 1031351
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871
|||||| | | ||||| || || || | ||||||||||||||| ||||||| |||
Sbjct 1031350 GCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCA 1031294
Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931
| | | || || ||| | |||| | | | || || ||||| || |||||
Sbjct 1031293 CTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 1031234
Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACC 42990
|||| | |||||| | || | | || ||| ||| | || ||||||||||| |
Sbjct 1031233 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTG-CTCTTCTCGGCATGAACGCTGCTT 1031175
Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-AG 43048
| ||| |||| ||||| ||| |||||| || | ||| || | | ||| | ||
Sbjct 1031174 TGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAG 1031116
Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108
| | ||||| | | ||| |||||||| |||||||||||||| | | || ||
Sbjct 1031115 AAGTAT-TACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAA 1031057
Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||||||||| ||||||||||| ||||||||||||||
Sbjct 1031056 GACCAACTTCTTCGAGAAGCGTGTCGCCGACTACCA 1031021
>seq145
Length=311005
Score = 190 bits (210), Expect = 4e-43
Identities = 480/719 (67%), Gaps = 17/719 (2%)
Strand=Plus/Minus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745
|||| ||| || || || ||||| || || || ||| | || ||||| |||||||
Sbjct 105561 GCCAAGTTACAAACAGCGACCTCGTC--AGGTGCACAGTATTCAACTATCTCTGTGCAGA 105504
Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805
| || || |||||| || |||| || ||||| ||| |||||| || ||||
Sbjct 105503 GATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCT 105444
Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865
||||||||||||| || ||||||||| || || |||||| | || ||| || |
Sbjct 105443 TGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCT 105384
Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925
| ||||||| ||| ||||| ||||||| ||||||||||| || || ||||
Sbjct 105383 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCT 105324
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
| || ||| || | || || | || ||||||||| |||||||| || |||
Sbjct 105323 CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCC 105264
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| || | || || | || ||||||||| || || ||||| || || | |||||
Sbjct 105263 ATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGA 105204
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | | | || ||| || |||||| | || || | || |||||||
Sbjct 105203 GATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGA 105144
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
| || ||||||| ||||| | ||||| |||| || || || ||||| || || ||||
Sbjct 105143 CATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCT 105084
Query 245166 GGTCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223
||| || ||| ||| | | | |||||| | || || |||| || || ||||| ||
Sbjct 105083 GGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGA 105026
Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280
|| ||||| ||||| ||||| || || || | | || | ||| |||||||
Sbjct 105025 GTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGATTCTG-TGGACATTCA 104970
Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339
|| | || || || | ||||||||| | ||| || |||||| || || || |
Sbjct 104969 GACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCC 104910
Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398
| || || |||||| |||||||| || || ||||| || || || | | ||||| ||
Sbjct 104909 CGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAG-TTGTGCTTGTGG 104852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944337264104640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |