Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq85 102 9e-17
>seq85
Length=1171154
Score = 102 bits (112), Expect = 9e-17
Identities = 165/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034
|||| ||||||| | | ||||||||||| ||| | || |||||| || || |||||
Sbjct 581306 TTATTGACCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 581247
Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|| || ||| || | || || | |||||||||||| || || |||| |||||||||
Sbjct 581246 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTC 581187
Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 42153
|| ||| | | |||||| ||| ||| || |||| ||| | | | ||||| ||
Sbjct 581186 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCAGACG 581128
Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || | || || || || || || | ||||| || ||||| |||||
Sbjct 581127 ACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || || ||||||| || || || | || || || ||||| ||||||||
Sbjct 581036 CTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAA 580977
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||||| ||||||||||| ||| | | |||||||||| ||| ||| |||| |
Sbjct 580976 AATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTT 580917
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | || || ||||| || |||| ||||| || || || || || ||||| ||
Sbjct 580916 ATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGAC 580857
Query 42197 AAAGATTTGCAT 42208
|| || |||||
Sbjct 580856 GAAAATCTGCAT 580845
Score = 86.0 bits (94), Expect = 7e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || |||||||| | ||||| || |||| || |||||||| ||||||||
Sbjct 580515 TCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 580456
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| | ||||||||||||| || | || ||||||||| ||| || |||| |
Sbjct 580455 ATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTG 580396
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | ||||| || || || |||| |||||||| ||||| ||
Sbjct 580395 TCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 580349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543211686413760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |