Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq85 102 9e-17 >seq85 Length=1171154 Score = 102 bits (112), Expect = 9e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 |||| ||||||| | | ||||||||||| ||| | || |||||| || || ||||| Sbjct 581306 TTATTGACCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 581247 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 || || ||| || | || || | |||||||||||| || || |||| ||||||||| Sbjct 581246 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTC 581187 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCG 42153 || ||| | | |||||| ||| ||| || |||| ||| | | | ||||| || Sbjct 581186 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCAGACG 581128 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || | || || || || || || | ||||| || ||||| ||||| Sbjct 581127 ACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || ||||||| || || || | || || || ||||| |||||||| Sbjct 581036 CTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAA 580977 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||| ||||||||||| ||| | | |||||||||| ||| ||| |||| | Sbjct 580976 AATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTT 580917 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || ||||| || |||| ||||| || || || || || ||||| || Sbjct 580916 ATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGAC 580857 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 580856 GAAAATCTGCAT 580845 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| | ||||| || |||| || |||||||| |||||||| Sbjct 580515 TCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAG 580456 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||||||||||| || | || ||||||||| ||| || |||| | Sbjct 580455 ATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTG 580396 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | ||||| || || || |||| |||||||| ||||| || Sbjct 580395 TCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 580349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211686413760