Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq85 102 8e-17
seq145 100 3e-16
seq95 91.5 1e-13
>seq85
Length=1171154
Score = 102 bits (112), Expect = 8e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| || | | || || ||||||| || ||||| || || ||||||||||| |
Sbjct 580552 ACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGA 580493
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| |||| || ||||||||||| || | || | |||||||||||||| ||
Sbjct 580492 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGG 580433
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || ||||| || || ||| ||| || | || || | || ||
Sbjct 580432 AATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGAC 580373
Query 64396 TTCTACAGTTACGGTCTTGCCGGT 64419
|| | ||| | ||||||||||||
Sbjct 580372 CTCGAGAGTGATGGTCTTGCCGGT 580349
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||||| || || || || || ||||| ||||| | | ||| || | ||
Sbjct 581057 AAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATC 580998
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||||| ||||| || || ||||||| | |||||||||||| || || || || || ||
Sbjct 580997 CTCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTC 580938
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || ||| ||| || || | |||||| | || || || | || | ||
Sbjct 580937 CTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGT 580878
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| ||||||| ||| || |||||||| |||||
Sbjct 580877 CTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 580845
Score = 86.0 bits (94), Expect = 6e-12
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || ||||||||||| | | |||||| | ||||| || ||||| |||
Sbjct 580813 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCG 580754
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || | || ||||| |||||||| || || || || ||||| || || |||
Sbjct 580753 GCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTG 580694
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | ||||| | || ||||| | ||| | ||||||||| || | |||
Sbjct 580693 ACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTC 580634
Query 64427 TTTACGA 64433
|| ||||
Sbjct 580633 TTGACGA 580627
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||| ||||| | || || || || || |||||||| || | ||||| | || ||
Sbjct 581282 CACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTC 581223
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
| |||||| || ||| |||| || | |||||||||||| || || || || || || ||
Sbjct 581222 CAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTG 581163
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
|| || ||| || || | ||| ||| | || ||||| | ||| | |||||
Sbjct 581162 GATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTT 581103
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| |||||||| || ||||| || |||||
Sbjct 581102 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073
>seq145
Length=311005
Score = 100 bits (110), Expect = 3e-16
Identities = 145/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 155225 AGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAA-CAAGAAACACGAAGATA 155283
||| ||||| || || | ||| ||||| || |||| ||| | |||||| || ||||| |
Sbjct 104923 AGTATCGTAAATCCCGTCGATACTGTCCTCCTTCAT-GTCGATCAAGAAGCATGAAGAGA 104865
Query 155284 ATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGT 155343
||| | ||| || |||||| ||||| | || ||| ||||||||||| |||
Sbjct 104864 GTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGC 104805
Query 155344 TGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCG 155403
||| |||| ||||| || ||||| || ||||| ||| ||||| ||||||| |
Sbjct 104804 TGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAG 104745
Query 155404 CCACGCGCATCAGCATGTGTTG 155425
|||| | ||| | |||||||||
Sbjct 104744 CCACTCTCATGATCATGTGTTG 104723
>seq95
Length=967449
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| |||||||||| ||||| || || || |||||||| || | || ||| || | |||
Sbjct 168589 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 168648
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||||||||| | ||||| || || |||||||| ||||| || || || ||
Sbjct 168649 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 168708
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 168709 TGGATCTT 168716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499643775728160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |