Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq85 95.1 1e-14
seq145 89.7 5e-13
>seq85
Length=1171154
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || | ||| | | |||||||| || |||||||||||||||
Sbjct 581299 CCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 581240
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| | || ||||| | | | ||||| | ||| ||||| || ||
Sbjct 581239 AAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGG 581180
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| || || | | || | ||||| | |||||| ||
Sbjct 581179 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACT 581120
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||||| ||| || || || ||||||||
Sbjct 581119 TCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073
>seq145
Length=311005
Score = 89.7 bits (98), Expect = 5e-13
Identities = 550/870 (63%), Gaps = 23/870 (3%)
Strand=Plus/Minus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656
|||| ||| |||| ||||| || || ||| || | | | ||| | || |||||
Sbjct 105570 GCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCT 105511
Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716
| |||||| ||| || ||| || | || | |||||| || || || |||||
Sbjct 105510 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA 105451
Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA---C 153773
|| || ||| |||||||| | || ||||||||| ||||| |||| ||| | |
Sbjct 105450 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 105391
Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833
| | || | ||| || | || ||| ||| || |||||| |||
Sbjct 105390 CAAAGC---TTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCA 105334
Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893
|| || |||||| ||||| ||||| || || || ||||| |||| | || |||
Sbjct 105333 TAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCAC 105274
Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953
||||| | ||| || | | | || || |||||| ||||| || | ||| ||
Sbjct 105273 ATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGA 105214
Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATT 154009
||||| | ||| ||||| || || | | ||| | || || | | |||| ||||
Sbjct 105213 GCGTAGAAGAGATCGCGAGC---GCGAACTTCCTCCTTTCCGTGGTTC-TTTCGGAGATC 105158
Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069
|| | | ||| || |||||||| || || | ||||| || | ||||| ||
Sbjct 105157 AAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCG 105098
Query 154070 CTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126
||| ||| ||||| || || | | | | |||||||| || || | ||| || |
Sbjct 105097 CTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAAC 105038
Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTT-GCTGCCGCGGGCGCGCACTTGAT 154185
| ||| | | | | ||||| || | || | ||| | | || | || | | |
Sbjct 105037 AATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG-CACGGATTCTGT 104979
Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTC 154244
| || || | || || || || | | ||| || || || || ||| || ||
Sbjct 104978 GGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTA 104920
Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304
||| || |||||||| || || || | | ||| |||||| || ||| | | |||
Sbjct 104919 TCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGT 104860
Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCT 154363
| | || || || | ||||||||| ||| |||||| ||||| | || |||
Sbjct 104859 GCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA- 104801
Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423
||| | ||| || ||||| || || |||||||| |||||||| |||| || ||
Sbjct 104800 CATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCAC 104741
Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGC 154453
| ||||| |||||| || |||||||||||
Sbjct 104740 TCTCATGATCATGTGTTGTGGACGTTCGGC 104711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261382662080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |