Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq85 95.1 1e-14 seq145 89.7 5e-13 >seq85 Length=1171154 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | |||||||| || ||||||||||||||| Sbjct 581299 CCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 581240 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| | || ||||| | | | ||||| | ||| ||||| || || Sbjct 581239 AAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGG 581180 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| || || | | || | ||||| | |||||| || Sbjct 581179 ATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACT 581120 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || || |||||||| Sbjct 581119 TCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 581073 >seq145 Length=311005 Score = 89.7 bits (98), Expect = 5e-13 Identities = 550/870 (63%), Gaps = 23/870 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| ||| |||| ||||| || || ||| || | | | ||| | || ||||| Sbjct 105570 GCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCT 105511 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | |||||| ||| || ||| || | || | |||||| || || || ||||| Sbjct 105510 GTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAA 105451 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA---C 153773 || || ||| |||||||| | || ||||||||| ||||| |||| ||| | | Sbjct 105450 GCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTAC 105391 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 | | || | ||| || | || ||| ||| || |||||| ||| Sbjct 105390 CAAAGC---TTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCA 105334 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || |||||| ||||| ||||| || || || ||||| |||| | || ||| Sbjct 105333 TAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCAC 105274 Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 ||||| | ||| || | | | || || |||||| ||||| || | ||| || Sbjct 105273 ATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGA 105214 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATT 154009 ||||| | ||| ||||| || || | | ||| | || || | | |||| |||| Sbjct 105213 GCGTAGAAGAGATCGCGAGC---GCGAACTTCCTCCTTTCCGTGGTTC-TTTCGGAGATC 105158 Query 154010 GAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 || | | ||| || |||||||| || || | ||||| || | ||||| || Sbjct 105157 AAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCG 105098 Query 154070 CTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 ||| ||| ||||| || || | | | | |||||||| || || | ||| || | Sbjct 105097 CTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAAC 105038 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTT-GCTGCCGCGGGCGCGCACTTGAT 154185 | ||| | | | | ||||| || | || | ||| | | || | || | | | Sbjct 105037 AATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG-CACGGATTCTGT 104979 Query 154186 GCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTC 154244 | || || | || || || || | | ||| || || || || ||| || || Sbjct 104978 GGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTG-AGAGTA 104920 Query 154245 CTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGC 154304 ||| || |||||||| || || || | | ||| |||||| || ||| | | ||| Sbjct 104919 TCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGT 104860 Query 154305 GGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAAC-AGTTTTTGGCT 154363 | | || || || | ||||||||| ||| |||||| ||||| | || ||| Sbjct 104859 GCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA- 104801 Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 ||| | ||| || ||||| || || |||||||| |||||||| |||| || || Sbjct 104800 CATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCAC 104741 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGC 154453 | ||||| |||||| || ||||||||||| Sbjct 104740 TCTCATGATCATGTGTTGTGGACGTTCGGC 104711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261382662080