Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq145 257 2e-63 seq85 141 1e-28 >seq145 Length=311005 Score = 257 bits (284), Expect = 2e-63 Identities = 1120/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || ||||| || ||| ||||||| || | ||||| | Sbjct 106443 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 106384 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | |||||| | |||| || |||||| |||||| || ||||||||| Sbjct 106383 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 106324 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || ||||| || ||||| | || | | | | || | || ||||| ||||| Sbjct 106323 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 106267 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| ||||| | || |||| || ||||||||| || |||| | Sbjct 106266 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGA---ACCTCCA 106210 Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | |||||| | | |||||||||||| || | ||||||| | Sbjct 106209 TCGGCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTC 106150 Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | | | | | || || || || ||||| || | | |||| ||||| Sbjct 106149 AACAACCAAGGG----TTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGAT 106094 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 ||||| ||||||||||| || ||||| ||| || | |||||| || ||| || Sbjct 106093 GTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGT 106034 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 ||||| || || | ||| | ||||| || ||||| | | | || ||| ||| | Sbjct 106033 TGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAA 105974 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATA 116085 || | ||||||| | || | | || | || ||| ||||||| | ||||| Sbjct 105973 GGTGGCCCAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCT 105916 Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145 ||||| || ||||| || || || ||||||| || | || | || || | || Sbjct 105915 CCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCA 105856 Query 116146 G-AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 || | || ||| | ||||| || || ||||| || || | ||| | || Sbjct 105855 ACAGATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTT 105797 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA--AATACATCCGCGAGACCTTGG 116262 ||||||| || || || | ||| || | | || || ||||| |||||||| ||| Sbjct 105796 GGCCTCGGGTGACTCGAATGGGAGTCG--AAGAGCTAGGAAGACATCGGCGAGACCCTGG 105739 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGA 116319 ||||| | |||| || | || | | ||| ||| || || ||| || || Sbjct 105738 ACACCAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGG 105682 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | ||||| | | | || | || || |||||||| || || ||| Sbjct 105681 TAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGA 105622 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | | || | |||| | | || ||||| || | || || || | || Sbjct 105621 AGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAA 105562 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 |||| ||||| |||| | ||| || || ||| || | || || || || | | Sbjct 105561 GCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGA 105502 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || || ||||| || | |||||| ||||| |||| ||| || ||||||||| Sbjct 105501 TTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTG 105442 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 |||||||| | || | || ||||| ||||| | || ||| || | | ||| | | || Sbjct 105441 TAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTC 105382 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAG 116672 | | || | ||| ||| || |||| ||| |||||||||| ||||| Sbjct 105381 TGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAG 105329 Query 116673 GGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 |||||||| || ||||| | | || | || || || || | || || | || Sbjct 105328 AGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAG 105269 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 | |||| |||| || |||||| |||||||||||||| ||||| ||||| || || | Sbjct 105268 TGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTA 105209 Query 116793 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 116852 ||||||||| ||| |||| |||| || | || || || || | || | || || Sbjct 105208 GAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTC 105149 Query 116853 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACC 116909 | || ||| |||||||| || || ||||| | ||||| | || ||| | || Sbjct 105148 AAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCC 105089 Query 116910 AGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATC 116969 | |||||| ||||| || || || ||| || || || ||||| |||| ||||| | Sbjct 105088 ACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTT 105029 Query 116970 AGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCAT 117029 || | || ||||| || ||| || |||| | || ||||| | || Sbjct 105028 GGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAG 104969 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||| ||||| || || ||| ||||| || || | ||||| | |||| ||||| Sbjct 104968 ACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCC 104909 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 ||||| ||| |||| | |||| | |||||| || | ||||| |||||| Sbjct 104908 GTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGT 104849 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCG 117207 || ||| ||||||||||| | |||||| || | | |||| |||||| || | Sbjct 104848 GCCGGCGGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATTAAATTG 104791 Query 117208 TAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAAC 117267 || ||||| | || ||| || |||||||||||||||| | || | ||| | | Sbjct 104790 TATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATC 104731 Query 117268 ATGTATTGGGG 117278 |||| ||| || Sbjct 104730 ATGTGTTGTGG 104720 >seq85 Length=1171154 Score = 141 bits (156), Expect = 1e-28 Identities = 302/444 (68%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| ||||||||||||||||| ||||| || | || ||| |||||||| Sbjct 1031023 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCAT 1031082 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || |||||||| || || || || | | ||| | | ||| ||| Sbjct 1031083 GAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG--GAGCAGA 1031140 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | |||| |||||||||| | |||| ||| |||||| |||| || | Sbjct 1031141 CGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCA 1031200 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || | |||| | | ||| || || ||||| || | | | | Sbjct 1031201 CAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCT 1031260 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGA-GTTCCACAGCAAACT 127526 || | | | | | || | || | | |||| ||| | | || ||||| | Sbjct 1031261 TGGACTGCTTGCTTGCTTGGACGATGGT-TCAAGTGGGAGAACAAGAGGCAG-GCAAAGT 1031318 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||||||||| ||||||||||||||||| || || |||||| ||||||||||| | Sbjct 1031319 CGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCA 1031378 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 |||| ||||||||||||||||| || | ||||| || ||||||||||| ||||| | Sbjct 1031379 GACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAA 1031438 Query 127647 CACACGCGAACGCAAATAGACGCT 127670 || || || |||| ||||||| Sbjct 1031439 CAGCGGCAAAGGCAACGAGACGCT 1031462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505942310240