Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq85 113 1e-19 seq95 105 2e-17 seq58 87.8 4e-12 >seq85 Length=1171154 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| |||||||| |||| |||||| || | || || | |||||| Sbjct 580828 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 580769 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| | ||| ||||| || ||| || || || || Sbjct 580768 TCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTGTCT 580709 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | || ||| || || | ||||| ||| Sbjct 580708 TGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTC 580649 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || || ||||| || || Sbjct 580648 TTGCCAGTAAGAGTCTTGAC 580629 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || ||||| || ||||| |||| |||||| || | | ||| Sbjct 580545 CGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTG 580486 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| | |||||||||||| || ||| || Sbjct 580485 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCC 580426 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| ||||| | | || || || | Sbjct 580425 TCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGA 580366 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 580365 GTGATGGTCTTGCCGGT 580349 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| || || || || ||||||||||| ||||| | |||||| ||| |||||| |||| Sbjct 581198 ACTAATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAACATCCA 581257 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||| ||||||||||| || || || ||| | ||||| Sbjct 581258 GAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCG 581293 >seq95 Length=967449 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || |||||||||||||| |||| ||||||||| | | || | |||||| Sbjct 168589 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 168648 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| |||||||||||||| || || ||||| || ||| || || ||| Sbjct 168649 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 168708 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| || || | | ||||| || | || || ||| Sbjct 168709 TGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTC 168768 Query 199598 TTACCCGT 199605 || ||||| Sbjct 168769 TTGCCCGT 168776 >seq58 Length=1028984 Score = 87.8 bits (96), Expect = 4e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||| | | ||| | ||||| || ||||||||||| ||||||| Sbjct 907502 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 907443 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||| |||||||| || ||||| || ||||| ||||| ||| || | Sbjct 907442 TCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 907383 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | || || | | ||||| || | || || ||||| || ||||||||||| || | Sbjct 907382 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 907323 Query 199620 A 199620 | Sbjct 907322 A 907322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919122790988