Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq85 109 5e-19 seq95 104 2e-17 seq58 87.8 2e-12 >seq85 Length=1171154 Score = 109 bits (120), Expect = 5e-19 Identities = 190/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || || | || ||||| | ||||||||| |||||| || Sbjct 1031631 GTATGTGTCGATGAGAAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATGATTTGGAA 1031690 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || ||||| ||||| || ||| ||| ||||| | || || Sbjct 1031691 CCCGTAGAAGCAGCGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTT 1031750 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| || ||||| || ||||| || || || ||||| || || | | Sbjct 1031751 CTCGTTGACAATTCCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCT 1031810 Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | ||| || | | | ||||||| | ||||||||||| || | || || Sbjct 1031811 CTCATCGTCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTC 1031870 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || ||||| || || |||||||| Sbjct 1031871 GGCGGTCCAGAATGAAGCCTCTGCCTTCTTGTACAT 1031906 Score = 104 bits (114), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| |||||| | | |||| | | || | | |||| Sbjct 580349 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATG--TCAAGA 580406 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| |||||| ||||||| ||||| | || | ||| |||| Sbjct 580407 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 580466 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| ||||| ||| || ||||||||||| |||||| | || || | Sbjct 580467 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 580526 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || ||| | | ||||| Sbjct 580527 ATCTCGTCCTCCGTCTTCGTGGCGG 580551 >seq95 Length=967449 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| |||||||||| || ||||| | ||| ||||| Sbjct 168716 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 168657 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | || |||||| ||||||||||||||| ||||| |||| || ||| Sbjct 168656 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 168597 Query 38448 TTGGTGCTGCGT 38459 | || || ||| Sbjct 168596 CTAGTCCTCCGT 168585 >seq58 Length=1028984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311 ||||| ||||| ||||| || || || || ||| |||| || ||| || |||| | | | Sbjct 907322 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 907381 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | || | | || || |||| ||||| |||||||| ||| ||||||| || || | Sbjct 907382 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 907440 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| || || ||||| || || | || || || |||||||||||| ||||| Sbjct 907441 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 907500 Query 38432 GG 38433 || Sbjct 907501 GG 907502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171774645760