Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq85 109 5e-19
seq95 104 2e-17
seq58 87.8 2e-12
>seq85
Length=1171154
Score = 109 bits (120), Expect = 5e-19
Identities = 190/276 (69%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| || || | || ||||| | ||||||||| |||||| ||
Sbjct 1031631 GTATGTGTCGATGAGAAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATGATTTGGAA 1031690
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || ||||| ||||| || ||| ||| ||||| | || ||
Sbjct 1031691 CCCGTAGAAGCAGCGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTT 1031750
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| || ||||| || ||||| || || || ||||| || || | |
Sbjct 1031751 CTCGTTGACAATTCCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCT 1031810
Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | ||| || | | | ||||||| | ||||||||||| || | || ||
Sbjct 1031811 CTCATCGTCATTGAGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTC 1031870
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| || || ||||| || || ||||||||
Sbjct 1031871 GGCGGTCCAGAATGAAGCCTCTGCCTTCTTGTACAT 1031906
Score = 104 bits (114), Expect = 2e-17
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| |||||||| |||| |||||| | | |||| | | || | | ||||
Sbjct 580349 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATG--TCAAGA 580406
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| |||||| ||||||| ||||| | || | ||| ||||
Sbjct 580407 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 580466
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| ||||| ||| || ||||||||||| |||||| | || || |
Sbjct 580467 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 580526
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || ||| | | |||||
Sbjct 580527 ATCTCGTCCTCCGTCTTCGTGGCGG 580551
>seq95
Length=967449
Score = 104 bits (114), Expect = 2e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| |||||||||| || ||||| | ||| |||||
Sbjct 168716 AAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAG 168657
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | || |||||| ||||||||||||||| ||||| |||| || |||
Sbjct 168656 CAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCAT 168597
Query 38448 TTGGTGCTGCGT 38459
| || || |||
Sbjct 168596 CTAGTCCTCCGT 168585
>seq58
Length=1028984
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311
||||| ||||| ||||| || || || || ||| |||| || ||| || |||| | | |
Sbjct 907322 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 907381
Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| || | | || || |||| ||||| |||||||| ||| ||||||| || || |
Sbjct 907382 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 907440
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| || || ||||| || || | || || || |||||||||||| |||||
Sbjct 907441 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 907500
Query 38432 GG 38433
||
Sbjct 907501 GG 907502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171774645760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |