Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq52 102 3e-16 seq85 96.9 1e-14 >seq52 Length=538554 Score = 102 bits (112), Expect = 3e-16 Identities = 187/274 (68%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 |||| || || || || ||||| ||| | ||||| || || ||||| ||||| || || | Sbjct 345627 TTACCGTCCCAGCATACTTCAACGATTCGCAACGTCAGGCTACTAAGGATGCTGGTCAAA 345568 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | || ||||| || | | || || || || || || ||||| || |||| Sbjct 345567 TTGCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCCGCTCTTGCTTATG 345508 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | | | | ||| | ||||| || | |||| || | |||| ||||||||| Sbjct 345507 GGTTGG-------AGAAGGAT--GAAGACAAGATTATTGCTGTCTATGATCTTGGTGGAG 345457 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 |||| ||||| || || ||| || | | || ||||| || || ||| | |||| Sbjct 345456 GAACCTTTGATATCTCCGTTCTTGAGATCCAGAAGGGTGTATTCGAGGTCAAGTCCACCA 345397 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 | ||||| ||||| | || || || ||| |||| Sbjct 345396 ACGGTGACACTCACTTGGGTGGAGAGGATTTTGA 345363 >seq85 Length=1171154 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || || || || || ||||||||| Sbjct 580845 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 580904 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | || ||| || || || ||||| || || || || || || Sbjct 580905 GATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 580964 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | |||||| | || || |||||||| ||||| | || ||| | |||||||| Sbjct 580965 CAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATTATAAC 581024 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 581025 ATCCAGAAGGAGTCTACTCTTCA 581047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975714248521712