Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq159 219 5e-52 seq105 132 6e-26 seq52 84.2 3e-11 >seq159 Length=1199673 Score = 219 bits (242), Expect = 5e-52 Identities = 499/745 (67%), Gaps = 8/745 (1%) Strand=Plus/Plus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 |||| ||||| || ||||||||||| |||||| || || | ||||| | Sbjct 167098 CTTTTTTATGCTTGCGTTTAAACTCACTTACGAAGTGGTTAACAAGACGATTGTCGAAGT 167157 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | |||||||||||||| || || || ||||| | ||||| ||||||||||| | || | Sbjct 167158 CCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCAAAGATACCCTCCTCGA 167217 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 | | || | || ||||| || || || ||||| || || || ||||| || || | Sbjct 167218 TAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGGACATTACGCT 167277 Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | | || || || || |||||||| || || || || || ||||| || || || | Sbjct 167278 CACCCTCAACCTTTTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTTGGCTCGTTGATGA 167337 Query 7644 TACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAAT 7703 | || ||| || || || || || | ||||| || || ||||| || || || | Sbjct 167338 TTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTTGTGGCTTGACGCTGGGAGT 167397 Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC-TTTCTTACCGAGATACGAT 7762 | | ||||| || || || || ||||| |||| |||| ||| | ||||| || | Sbjct 167398 CAGTGAAGTAAGCTGGTACAGTAACGACGGCGTTGTTGACAGTTCCT-CCGAGGTAAGCC 167456 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||| |||| ||| | | ||| || || ||||| |||| | || || Sbjct 167457 TCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATCTCCTCAGGTGTGAATTGC 167516 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | || || || || ||||| || | | || || || || ||| | || ||| Sbjct 167517 TTCTTCTCGCCCTTGAACTCAACCTCGACGACTGGCTT-TC--CACCACGGTCGAGAACA 167573 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | | | |||||||| | ||||||| || | |||| | ||| || Sbjct 167574 GTGAAGGGGAAGTGCTTCATATCAGCCTGGACCTCAGCATCTGCGTACTTGCGTCCAATC 167633 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 |||||||| ||||| || || ||||| | ||||||||||| ||||||||| || || Sbjct 167634 AGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCAACTTGGTTCTTGGCAGCA 167693 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| | ||| ||| || || || || |||||| | || || || || || || Sbjct 167694 TCTCCGATCAAACGCTCAGTA---TCTGTGAAGGCGACGAAGGAAGGTGTTGTGCGGTTT 167750 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || |||||||| || || ||||| | || || | | ||| || ||||| || || Sbjct 167751 CCCTGGTCGTTTGCGATGATTTCGATACGATCATCTCTGAAGATACCCACGCAAGAGTAG 167810 Query 8123 GTTGTTCCTAAATCAATACCGATTG 8147 || || || | ||| || || |||| Sbjct 167811 GTGGTACCCAGATCGATTCCTATTG 167835 >seq105 Length=2038561 Score = 132 bits (146), Expect = 6e-26 Identities = 246/359 (69%), Gaps = 13/359 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||||| | || || || | ||| Sbjct 1646327 ATCGAAATCTTCTCCTCCCAAGTGGGTGTCACCAGCGGTTGAGAGAACCTCGAAAACACC 1646386 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | |||||| || | |||||||| || || || ||||| || || | ||||| Sbjct 1646387 ACGATCAATGGACAAGAGGGAAACATCGAAGGTTCCGCCACCGAGATCGTAGACAATGAT 1646446 Query 7573 T--ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | ||| || || | | | |||| || || ||||| |||||||| || || || Sbjct 1646447 TTGACGCTC---TC-----CCTCGGTCTTGTCAAGTCCGTATGCGATAGCTGCGGCGGTA 1646498 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || | ||||||||| ||||| || || ||| | || || || || ||| Sbjct 1646499 GGTTCGTTGACAATACGAAGGACGTTCAAACCGGCGATAACACCGGCGTCCTTGGTAGCT 1646558 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| || ||||| ||||| || ||||| || || || |||| || || || | Sbjct 1646559 TGTCTCTGGTTGTCGTTGAAGTATGCGGGGACGGTAACAACGGCGTGGGTAACCTTGTGT 1646618 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || ||||| |||| ||| ||||| || || | ||| | ||| |||||||| Sbjct 1646619 CCGAGGTATGATTCGGCGACATCCTTCATCTTTCCCAGGATCATGGCTGAGATCTCTTC 1646677 >seq52 Length=538554 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/284 (68%), Gaps = 14/284 (5%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||| || ||||||||||| || || || ||| | ||||| || || | ||| Sbjct 345363 TCAAAATCCTCTCCACCCAAGTGAGTGTCACCGTTGGTGGACTTGACCTCGAATACACC- 345421 Query 7517 CCTTCAATGTTT-AACAACGAA-ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 |||| | | || |||| | | |||||| || || ||||| || ||| | | || | Sbjct 345422 -CTTCTGGATCTCAAGAACGGAGATATCAAAGGTTCCTCCACCAAGATCATAGAC-AGCA 345479 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | ||||| | ||| || | || || || | ||| || || ||||| | Sbjct 345480 ATA----ATCTT-GTCTTCATCCTTCTCCAACCCATAAGCAAGAGCGGCAGCGGTTGGCT 345534 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTG 7692 | || | | ||| ||| ||| || || ||||| ||| | ||||| || || || || Sbjct 345535 CGTTGACTACACGGAGAACGTTAAGACCTGCAAT--TTGACCAGCATCCTTAGTAGCCTG 345592 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 |||||||||||||| ||||| || ||||| || || || |||| Sbjct 345593 ACGTTGCGAATCGTTGAAGTATGCTGGGACGGTAACAACGGCGT 345636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131497977760