Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq145 342 6e-89 seq85 150 2e-31 >seq145 Length=311005 Score = 342 bits (378), Expect = 6e-89 Identities = 929/1396 (67%), Gaps = 37/1396 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| ||||| ||||| | || || ||||||| || ||||| |||||||| || | Sbjct 104720 CCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATATTGAGAGTGCT 104779 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||||||| | |||||| | ||| || | ||||| | ||||||||||| Sbjct 104780 ATCGAGACATACAATTTAATGTCCAGCAAGTACTTT-ACACACGCGTCTCCAACCCTCTT 104838 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || |||||| | | ||| | || || ||| | || | | |||||||| Sbjct 104839 TGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATGAAGGAGGA 104898 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| | || ||||||| ||||||| |||||| ||||| ||| ||||| Sbjct 104899 CAGTATCGACGGGATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAGAATGCTGG 104958 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||||| || | |||| || | |||| || ||| || ||||| Sbjct 104959 AGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATTGCTGGCACAAA 105018 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 || | || | |||||| |||| ||||| || || || ||| |||||| | ||||| Sbjct 105019 CGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCAGATATGT 105078 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| | ||| | ||| || || |||| |||| || |||||||||||||| Sbjct 105079 TGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATGGCACGC 105138 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGTGC 112085 ||| || | ||||||||||| | || ||||| || | ||||| | |||| | Sbjct 105139 TGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTTCGCGCT-- 105196 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 ||||||||||||| |||||| |||||||||||||||||||||||| | |||||| ||| | Sbjct 105197 CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAAT 105256 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 || | ||| | || | || || || || |||||||| | |||| ||||| Sbjct 105257 GGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGAC 105316 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263 || ||||| || ||||| |||||||||| || ||| | | | | || ||| | | Sbjct 105317 GAATTTGAGGCTCTCTATGAGAAGTACGAGGCAG-AAGGCAAGGGTC-GCAAGACCAT-C 105373 Query 112264 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 || | || | | ||| | | || ||| || | ||||||||||| || | || | Sbjct 105374 AAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTC 105433 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| ||||| || || || |||| |||||||||||| ||||| | ||| ||| Sbjct 105434 ATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGGTACCATCCGC 105493 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACGGCTGTGT 112440 || ||||| ||||| ||||| || | ||| ||| | || || ||| ||||| | Sbjct 105494 AGCTCCAATCTCTGCACAGAGATAGTTGAA--TACTGTGCACCTGACGAGGTCGCTGTTT 105551 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA--TTTGA 112498 ||||| | || || | |||||||| | || || | ||| | | | | || | || Sbjct 105552 GTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGATGGCAGCTACGA 105609 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | | || || ||||| || | |||| || ||| | |||| | || || Sbjct 105610 CTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAACAAGATCATCGA 105669 Query 112559 TAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 | || | ||||| ||| ||| || || || ||| | | ||| | || || Sbjct 105670 CATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGTCACAGACCTAT 105726 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675 || | | |||||||| |||||||| ||||| ||| | | ||| | | |||| || || Sbjct 105727 TGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACTCCCATTCGAGTC 105786 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || || | ||||| | || || ||||| || || ||||| || ||||| Sbjct 105787 ACCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCACGCTGC-CTTGA 105845 Query 112736 GGCGA---GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 | ||| ||| | ||| || ||||| | || || || | || ||||| || Sbjct 105846 CTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACATACGAAGGTTCCCC 105903 Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACG 112851 |||||||||||| | ||| |||| ||||||| ||||||| | ||| | | || | | Sbjct 105904 AGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTACCGATCTTTGGG 105962 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 |||||| | | | ||| ||| |||||| || | ||||||||||||||| | | | | Sbjct 105963 ACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAGTTTGCTCGTTG 106022 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || |||||||| ||| ||| |||||| | || || || || || || || | Sbjct 106023 CTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTGTTTCGAGCCAT 106082 Query 112972 ACACGACGAACATCTA 112987 |||| | |||||||| Sbjct 106083 ACACATCCAACATCTA 106098 >seq85 Length=1171154 Score = 150 bits (166), Expect = 2e-31 Identities = 310/456 (68%), Gaps = 20/456 (4%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || ||| |||| ||| | || ||||| ||||||||||||||||||||| ||||| ||| Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | |||| | ||| | |||||||| ||||| ||||||||||| ||||||||||||| Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAATTATT 102352 || ||||| |||||||| || |||||| || ||||| || ||| ||| | Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC-------T 1031298 Query 102353 GCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGCCGTTG 102405 | || ||||| || | || | | || || | || ||| || || |||| Sbjct 1031297 CCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTG 1031238 Query 102406 AGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 102465 |||| ||| | | ||| | ||||| ||||| || ||||| |||| ||||| ||| Sbjct 1031237 AGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTG 1031178 Query 102466 AAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 102525 |||| |||| ||||||| || ||||| | || | | || ||| Sbjct 1031177 CTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTCGGTAA 1031120 Query 102526 CTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGG 102583 | || || || ||| || ||||| ||||||||||||||||| || | ||| Sbjct 1031119 CGAGAAGTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGG 1031060 Query 102584 GAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 ||||| ||||||||||| ||| | || | ||||| Sbjct 1031059 AAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 1031024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741127478080