Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq145 250 3e-61 seq59 114 2e-20 seq95 86.0 7e-12 seq52 86.0 7e-12 seq47 86.0 7e-12 >seq145 Length=311005 Score = 250 bits (276), Expect = 3e-61 Identities = 1124/1752 (64%), Gaps = 63/1752 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||||||||| || ||||| |||||||| |||||||||||| ||||| | ||||| | Sbjct 106351 GTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACGATGGT 106292 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || || || ||||||||||||||||| | | ||||||||| | ||||| | Sbjct 106291 ACGCT---GGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATATT 106235 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 || ||||| || || || ||| | | || | | |||||| | | ||||| Sbjct 106234 AGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGACCA 106175 Query 109677 GAGACCGACCTTTTTGAGATCGT-CAACAAG-ATGCTTGTTGACCACGACAAATTCACCA 109734 |||||| | | ||||| | |||||| | | ||| || || ||||||||| Sbjct 106174 GAGACCCATATCGACAAGATCCTTCAACAACCAAGG--GTTAACGACTTGGAATTCACCA 106117 Query 109735 GCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCT 109794 || | |||||| ||||||||| | ||||| || ||||||||||| ||| ||| Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057 Query 109795 AGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851 |||||||| | ||| | || || ||||| ||||| | ||| | |||||| || ||| Sbjct 106056 AGGATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGA 106000 Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911 || | | ||| | | | || | | |||| || || || | || | || Sbjct 105999 CCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTA--- 105943 Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971 ||| ||| ||||||| ||| || | || | | ||| || ||||| | | | || Sbjct 105942 --ACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTC 105886 Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCG---GATGAAGCCTCTAGTGCCGCATGATAC 110028 ||||| | || | || || | ||| ||||||| || || || || || || Sbjct 105885 TCGTAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAG--TCAAG-GCAGCGTGGTAG 105829 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 || ||||| || || || ||| | | | ||| | ||||| || || | | Sbjct 105828 ATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGGGAGTCGA 105769 Query 110089 CAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATG 110148 | | || ||||| || |||||||| ||||| | | |||| || | || | Sbjct 105768 AGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAA 105709 Query 110149 TTAGAGCGTCGAGCAGTTTCT-----ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGA 110203 || || || || || || || ||||| ||||| |||||||| | || | Sbjct 105708 TT---GC-TCTTGC-GTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCA 105654 Query 110204 GATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT 110263 |||||| ||| || || || || || || | | ||| | | | | || Sbjct 105653 AGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTA-GCTGCCATCA 105595 Query 110264 CCTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322 || ||||| || | |||||||||| ||| || | || || |||| |||||| Sbjct 105594 TTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCA 105535 Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382 | |||||| | || || || || | ||||| || ||| ||| | |||| Sbjct 105534 GGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTC 105475 Query 110383 TTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 |||||||| | ||| | |||||| |||||||| ||||||||| | ||| | || || || Sbjct 105474 TTCTGATTACTCTTTCG-GTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTC 105416 Query 110442 CGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGC 110498 || || | || ||| |||| | ||| | | || | ||| || || |||| | | Sbjct 105415 GGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACC 105359 Query 110499 GAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGA 110558 ||||| |||||||||| || | |||||||||| | ||||| ||||||| Sbjct 105358 CTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGC 105299 Query 110559 AAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTT 110618 |||||| || || ||| || | || | ||| | ||| || |||||| | ||| Sbjct 105298 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTT 105239 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATC 110678 |||||| || || |||||||| | || |||| || || || ||| | || || | Sbjct 105238 CATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTT 105179 Query 110679 ACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATA 110738 || ||||| || || || | || || | || ||| | ||||||||| ||||| || Sbjct 105178 TCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTA 105119 Query 110739 GACAGCGATGGATCC------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGC 110792 || |||| | || |||| | |||| |||| |||||| | |||||| Sbjct 105118 GATCGCGAAAGCACCAGGGCGCTTATTTCCACCC---TGGTCAACATATCTGGCTGTGTT 105062 Query 110793 ATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCT 110852 ||||| || | ||||||||||| ||| || | ||| | || ||||| || ||| Sbjct 105061 GTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTA 105002 Query 110853 GGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAAT 110912 | | ||||||| || ||||| || || ||| ||||| || || ||| || Sbjct 105001 AGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGAT 104942 Query 110913 TTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAA 110971 ||||| ||| |||| ||| | ||||| || || || || |||| || | | Sbjct 104941 CATGGCACAAGTCT-TGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGA 104883 Query 110972 TTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCG 111031 | | ||||| ||||| | || | | || || || || ||||| || || | || Sbjct 104882 TCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACG 104823 Query 111032 CATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATC 111089 | || || | || |||| |||||| |||||||| |||| || | ||| Sbjct 104822 CGTG--TGTAAAGTACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATC 104765 Query 111090 TTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTT 111149 | ||||||||||| | || |||| ||||| ||| | ||| || |||| | ||| Sbjct 104764 ATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTT 104705 Query 111150 TCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATC 111209 || || | ||| ||||||| |||| || ||||||| ||||||||| | | Sbjct 104704 GCCCTCGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTT 104645 Query 111210 GAAATCACGATC 111221 |||||| ||||| Sbjct 104644 GAAATCCCGATC 104633 >seq59 Length=800985 Score = 114 bits (126), Expect = 2e-20 Identities = 279/413 (68%), Gaps = 16/413 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||||||||| || || | || || | |||||||| ||| | ||| ||| | || Sbjct 82160 ATCGAAACGACCAGGACGCATAAGCGCCTTATCAAGAACATCAGGTCTGTTGGTACCAGC 82101 Query 11565 AATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 | || || | ||| | || | ||| || |||||||| || || |||| ||| || Sbjct 82100 GAGAACAACCACTTGCTCGGT---AGTGTTAAATCCGTCCATCTCGGTAAGAATCTGATT 82044 Query 11622 GATCGTCTGTTCACGCTCATCGTTGG-AGGGCATA-----CCA-CCTGCCGAACGCTTCT 11674 || || ||| || |||||||| | || | ||| ||| || | || | Sbjct 82043 GAGAGTGGCTTCTCGTTCATCGTTTCCACCGCCGAATGATCCAGCCTTCCCA-CGAGCTT 81985 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | |||| |||||| |||||||||||||| | ||||| || ||| | |||| Sbjct 81984 TCCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATAG 81925 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||| | ||||| || | | || || ||||| || |||||||| ||||| | | Sbjct 81924 TGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAAC 81865 Query 11795 CAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | | ||| ||||| ||| || || | ||| ||||||||| | || || || ||||| Sbjct 81864 CGGAAACGCTGAA-GAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 81806 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| || ||||| | ||||| |||| ||| ||||| || ||||| ||||| Sbjct 81805 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 81753 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 781608 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 781667 Query 136777 GGGAACAG-CTTTT 136789 | || ||| ||||| Sbjct 781668 GTGATCAGACTTTT 781681 >seq95 Length=967449 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 668987 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 668928 Query 136777 GGGAACA 136783 | || || Sbjct 668927 GTGATCA 668921 >seq52 Length=538554 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 458525 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 458466 Query 136777 GGGAACA---GCTTTT 136789 | || || |||||| Sbjct 458465 GTGATCATTTGCTTTT 458450 >seq47 Length=927642 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 671558 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 671499 Query 136777 GGGAACA 136783 | || || Sbjct 671498 GTGATCA 671492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974792599200