Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq145 316 2e-81 seq85 140 4e-28 seq59 96.9 4e-15 >seq145 Length=311005 Score = 316 bits (350), Expect = 2e-81 Identities = 1170/1808 (65%), Gaps = 39/1808 (2%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| |||||||| || || ||||| | | |||||| | | Sbjct 106443 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 106384 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| |||||| | |||| | ||||| ||| |||||| |||||| Sbjct 106383 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 106324 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG---ATTTCCCACACTGTG 105766 |||||| | || ||||| | || || | | | || | || ||||| || || Sbjct 106323 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 106267 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826 ||| ||| ||||||||| | || |||| | || |||||| || ||||| || | Sbjct 106266 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 106207 Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACG 105886 || || | | |||||| | | ||||| ||||| || | ||||| || | Sbjct 106206 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAC 106147 Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946 | ||| || | || || || || | | | || |||||||| | Sbjct 106146 AACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTGGAT 106087 Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| || || || || || || || | |||||| ||| ||| |||||||| Sbjct 106086 GTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGCATA 106027 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 || || | | | ||||||||||||||| | | |||||| ||| ||| | || Sbjct 106026 GGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTGGCC 105967 Query 106067 CAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124 ||||| | || | | ||| | ||||||| ||||||| |||| ||| | ||||| | Sbjct 105966 CAGTCCCAAA-GATCGGTAGGTGTAACCTTCC-ACATATCGTATTGGAGCTCTCCTTGTG 105909 Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGG-GCTTCAGCCAATTCA-CAGCT 106182 | | || ||||| || ||||||| || | ||| || |||| || | ||| ||| | Sbjct 105908 AAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTT-GCAAGCTCAACAGAT 105850 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 || ||| | ||||| || ||||| || ||||| | ||| | | ||||| || Sbjct 105849 GAAGTCAAGGCA-GCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCCTC 105791 Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCA 106301 ||| || |||| | || | | | | || ||||| |||||||| || ||||| | Sbjct 105790 GGGTGACTCGAATGGG-AGTCGAAGAGCTAGGAAGACATCGGCGAGACCCTGGACACCAA 105732 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAAT 106358 | ||||||||||||| || | ||| ||| || || ||| ||| || || | | Sbjct 105731 CAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGTAGT 105675 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | |||| |||| ||| | || || |||| || || || ||||| || | Sbjct 105674 TGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCTTCT 105615 Query 106419 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 | | || | ||| | | || ||||| || |||| || || | || ||||| | Sbjct 105614 GAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCAAGT 105555 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 | |||||||| ||| || | ||| || | || ||||| || | ||||| | Sbjct 105554 TACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGGAGC 105495 Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598 | || || || | ||||| || ||||||||| |||||| |||||||||||||||| Sbjct 105494 TGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGAGCA 105435 Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657 || | || | || ||||| || || | || ||| || | | ||| | | || | | || Sbjct 105434 TGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCT 105375 Query 106658 GGTACAATGGCGTTGG--CCCGTCCCTCC-GCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714 | |||| ||| ||| | ||| | ||||||||||| ||||| || ||||| Sbjct 105374 TG----ATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCAAAT 105319 Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774 || ||||| | || | ||||| || || || || || | || | |||| | Sbjct 105318 TCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTA 105259 Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834 ||| || |||||| ||||||||||| || ||||||||||| || | | |||||||| Sbjct 105258 CCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCG 105199 Query 106835 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 106894 | | ||| | || || | || ||||| ||| | ||||||||||| | || ||| Sbjct 105198 CGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCA 105139 Query 106895 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTT 106951 |||||||||||||| || |||| |||| || || || | ||| | || | Sbjct 105138 GCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCA 105079 Query 106952 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 107011 ||||| | |||||| ||| || || || ||||| |||| |||||| | || | || Sbjct 105078 ACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCG 105019 Query 107012 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 ||||| || ||| || | | |||| | | |||| | || || ||||| Sbjct 105018 TTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCT 104959 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 ||||| ||| ||||| ||||| | | ||||| | || || |||| ||| | Sbjct 104958 CCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTG 104899 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 |||||||| || |||| | |||||| || | || | | |||||| || || Sbjct 104898 TCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCA 104839 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCA 107249 ||||||||||| | ||||| || | | |||| |||||| | ||||||||| | Sbjct 104838 AAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATTAAATTGTATGTCTCGA 104781 Query 107250 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGG 107309 || ||||| || |||||||| || |||| ||||| | ||| | ||||| ||| | Sbjct 104780 TAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGTTGTG 104721 Query 107310 GTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGA 107368 | ||| | |||| ||||| || |||| || | || ||||||| || |||| Sbjct 104720 GACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGATC-TCTCAAGAGTCTTGAAT 104662 Query 107369 CCAAAGTA 107376 |||||||| Sbjct 104661 CCAAAGTA 104654 >seq85 Length=1171154 Score = 140 bits (154), Expect = 4e-28 Identities = 303/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| | || |||||||| |||||||||||||| || |||| ||||| ||||| Sbjct 1031024 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATG 1031083 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAA-ATGGGTGGCACCCCAACTTGTTTGAGGAGACG 117104 ||||| ||||| || | || || | | | || | | ||| ||||| Sbjct 1031084 AAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 1031142 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 ||| | || |||||||||| | |||| ||| |||||| |||| ||| ||| Sbjct 1031143 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 1031202 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 || || || || | |||| ||| ||| |||||||| ||||| | | | | | || Sbjct 1031203 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 1031262 Query 117225 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCT 117283 || | || | | || | || ||| ||| | | || |||||| || Sbjct 1031263 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 1031321 Query 117284 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGAC 117343 ||||||||| || || ||||| || || || || |||||| || |||||||| |||| Sbjct 1031322 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 1031381 Query 117344 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 117403 | |||||||||||||| | |||| | |||||| |||||||||||||||||||| ||| Sbjct 1031382 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 1031441 Query 117404 ACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| |||| || |||| ||||| Sbjct 1031442 CGGCAAAGGCAACGAGACGCTGAGCGAA 1031469 >seq59 Length=800985 Score = 96.9 bits (106), Expect = 4e-15 Identities = 271/409 (66%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||| || ||||| ||||| | ||||| | |||||| | |||| | || || | || Sbjct 82160 ATCGAAACGACCAGGACGCATAAGCGCCTTATCAAGAACATCAGGTCTGTTGGTACCAGC 82101 Query 9254 GATGACAACAA-TACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || ||||| | | || | | | | ||| || |||||||| || | || || || | Sbjct 82100 GAGAACAACCACTTGCTCGGT-AGTGTTAAATCCGTCCATCTCGGTAAGAATCTGATTGA 82042 Query 9313 TAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCA-CCAGCACTGCGTTG--CTTTCC 9367 ||| ||| |||||||| || | | | | | | ||||| | | | |||||| Sbjct 82041 GAGTGGCTTCTCGTTCATCGTTTCCACCGCCGAATGATCCAGCCTTCCCACGAGCTTTCC 81982 Query 9368 C-ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 | | || || |||||||| ||||||| |||||| || || | | || || | Sbjct 81981 CGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATAGTGA 81922 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 | | ||| || ||||| || || |||||||||||||||||||| || | | ||| Sbjct 81921 ATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAACCGG 81862 Query 9487 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 || || ||| || || | ||||||||| || | || ||| |||||||| |||| Sbjct 81861 AAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTTTTAC 81802 Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 | || || || ||| | || | |||||| || |||||||| || || Sbjct 81801 CTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 81753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979590539360