Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq90 104 3e-17 >seq90 Length=3320302 Score = 104 bits (114), Expect = 3e-17 Identities = 346/524 (66%), Gaps = 37/524 (7%) Strand=Plus/Plus Query 159276 TATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGC 159335 |||||| || |||||| || | || || ||||| ||| | || | ||||| |||| | | Sbjct 2969719 TATCACTGGATTTGATGCTGTGTCCTTGCAACCCAACTCTGGTGCCCAGGGCGAGTTTAC 2969778 Query 159336 AGGACT----GTTA---GCAA--TCCAAGCATACCATCAAGGATCAGGAGATGATAAAAG 159386 ||||| |||| |||| |||||| | | || | ||| || || | | Sbjct 2969779 TGGACTTCGTGTTATCCGCAAGTTCCAAGAACAGCAACCAGG--CAAGA-------AGCG 2969829 Query 159387 AAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGC 159446 || | || ||||| |||| || ||||| |||||||| || ||||| || | ||||| Sbjct 2969830 CGATATCTGCTTGATTCCAGTCTCCGCACACGGAACTAACCCAGCATCTGCCGCCATGGC 2969889 Query 159447 AGGGATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGAT-GGCAACATAGACATCAAAGA 159503 || ||| ||| ||| |||||||||| | || || || | || || | || Sbjct 2969890 TGGAATGCGAGTCGTAACCATCAAGTGTGACACCAAGACCGGAAATCTCGATATGGAGGA 2969949 Query 159504 TCTAGAGAAG--AAAGCAATCATGAATACATTT--GAACT--GT-CATGTATTATGATTA 159556 ||| |||| |||| | |||||| ||||| || || || ||||| | Sbjct 2969950 TCT---GAAGGCAAAGTGCG-AGAAATACAGCGAAGAACTCGGTGCA---ATCATGATCA 2970002 Query 159557 CATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA-CAGATATGTAAGATTGTT 159615 | ||||| |||| ||||| || || | | ||| | | | | ||| | ||||| Sbjct 2970003 CCTATCCCAGTACATTCGGTGTCTTCGAGCCCGAAGTCAAAGCCGCT-TGTGACCTTGTT 2970061 Query 159616 CATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTA 159675 ||| || ||||||| || ||||| | ||||| || || | ||||| ||| | ||||| Sbjct 2970062 CATCAGCATGGTGGGCAAGTATACATGGATGGCGCCAACATGAATGCTCAGATTGGTCTC 2970121 Query 159676 GCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGT 159735 || | || || || || || || ||| | ||| |||| |||||||||||| Sbjct 2970122 TGTTCGCCCGGCGAGATCGGAGCTGACGTCTGCCATTTGAACCTACACAAGACATTCTGT 2970181 Query 159736 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || ||||| ||||| || || || || |||||||| Sbjct 2970182 ATTCCTCACGGTGGTGGTGGTCCAGGTGTTGGACCAATTGGTGT 2970225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588049994495040