Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq95 140 7e-28 seq85 134 3e-26 seq58 134 3e-26 seq145 86.0 1e-11 >seq95 Length=967449 Score = 140 bits (154), Expect = 7e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| ||||| || || || ||||| |||| || || | ||||||||| Sbjct 168592 ACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCG 168651 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || ||||||||||| || |||||||| || ||||| || Sbjct 168652 AGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 168711 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || || || ||| || || || ||||||| ||||| Sbjct 168712 ATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTCTTG 168771 Query 195112 CCTGTCA 195118 || |||| Sbjct 168772 CCCGTCA 168778 >seq85 Length=1171154 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || |||||||||| || || | ||||||||||| || Sbjct 580820 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTG 580761 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | ||||| || || ||||| ||||| || |||||||| || || Sbjct 580760 CTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTT 580701 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || || ||| ||||| || || | ||||| || || Sbjct 580700 CGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGT 580641 Query 195117 CAAAGTTTTTACGA 195130 | ||| || |||| Sbjct 580640 AAGAGTCTTGACGA 580627 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || || || || || |||||||| | ||||| | || || ||| Sbjct 580533 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 580474 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || |||||||| || |||||||| Sbjct 580473 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 580414 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || ||||||||| || || || || || | ||||| Sbjct 580413 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 580354 Query 195112 CCTGT 195116 || || Sbjct 580353 CCGGT 580349 >seq58 Length=1028984 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 |||||||| ||||| |||| |||||||| ||||| ||||||||||| || |||||||| Sbjct 907500 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 907441 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||| ||||| || || || || || ||||| || || || |||||| || ||| Sbjct 907440 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 907381 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || || || || || || ||||||| |||||||| || | |||||| ||||| Sbjct 907380 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 907322 >seq145 Length=311005 Score = 86.0 bits (94), Expect = 1e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| | |||| | | ||||| ||||||||| | || | | ||||| ||| Sbjct 105206 TTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGG 105265 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | || | || ||||| || || || |||| ||||||||| ||| ||| || ||| Sbjct 105266 ACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAATTTGAG 105325 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767 |||| ||||| | ||||| ||| || ||| | | || | | | |||||||| | Sbjct 105326 GCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA-GACCATCAAGGCCCAGAA 105384 Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827 || ||| | |||||| | || ||| |||| || | || || || ||||| Sbjct 105385 GCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTCATGCTCTACAA 105444 Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 |||||| | || |||||||| ||||||||| |||| Sbjct 105445 GGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGG 105483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479268701788