Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq95 140 7e-28
seq85 134 3e-26
seq58 134 3e-26
seq145 86.0 1e-11
>seq95
Length=967449
Score = 140 bits (154), Expect = 7e-28
Identities = 143/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| ||||| || || || ||||| |||| || || | |||||||||
Sbjct 168592 ACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCG 168651
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| || |||||||| || ||||||||||| || |||||||| || ||||| ||
Sbjct 168652 AGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 168711
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || || || ||| || || || ||||||| |||||
Sbjct 168712 ATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTCTTG 168771
Query 195112 CCTGTCA 195118
|| ||||
Sbjct 168772 CCCGTCA 168778
>seq85
Length=1171154
Score = 134 bits (148), Expect = 3e-26
Identities = 146/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||||||||| || || || |||||||||| || || | ||||||||||| ||
Sbjct 580820 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTG 580761
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | ||||| || || ||||| ||||| || |||||||| || ||
Sbjct 580760 CTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTT 580701
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || ||||| || || ||| ||||| || || | ||||| || ||
Sbjct 580700 CGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGT 580641
Query 195117 CAAAGTTTTTACGA 195130
| ||| || ||||
Sbjct 580640 AAGAGTCTTGACGA 580627
Score = 118 bits (130), Expect = 2e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || |||||||| || || || || || |||||||| | ||||| | || || |||
Sbjct 580533 ACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCG 580474
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || |||||||| || ||||||||
Sbjct 580473 AGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGG 580414
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || || ||||||||| || || || || || | |||||
Sbjct 580413 ATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTG 580354
Query 195112 CCTGT 195116
|| ||
Sbjct 580353 CCGGT 580349
>seq58
Length=1028984
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|||||||| ||||| |||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct 907500 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 907441
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||| ||||| || || || || || ||||| || || || |||||| || |||
Sbjct 907440 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 907381
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| || || || || || || ||||||| |||||||| || | |||||| |||||
Sbjct 907380 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 907322
>seq145
Length=311005
Score = 86.0 bits (94), Expect = 1e-11
Identities = 188/279 (67%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
|||||||| | |||| | | ||||| ||||||||| | || | | ||||| |||
Sbjct 105206 TTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAAGAATGGTACATGG 105265
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
| || | || ||||| || || || |||| ||||||||| ||| ||| || |||
Sbjct 105266 ACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACGGTGACGAATTTGAG 105325
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGA 160767
|||| ||||| | ||||| ||| || ||| | | || | | | |||||||| |
Sbjct 105326 GCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA-GACCATCAAGGCCCAGAA 105384
Query 160768 ACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAA 160827
|| ||| | |||||| | || ||| |||| || | || || || |||||
Sbjct 105385 GCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCCTTTCATGCTCTACAA 105444
Query 160828 GGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866
|||||| | || |||||||| ||||||||| ||||
Sbjct 105445 GGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGG 105483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109479268701788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |