Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq159 132 4e-25 seq67 105 5e-17 >seq159 Length=1199673 Score = 132 bits (146), Expect = 4e-25 Identities = 461/712 (65%), Gaps = 13/712 (2%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| |||||||| ||||||| ||||| | ||||| || | || || ||| | Sbjct 166992 GCTCTCCGTCGTCTCCGAACTGCATGCGAGCGTGCCAAGCGTACCCTCTCTTCTTCCGCA 166933 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 |||||| | ||||| | || || | |||||||| ||||||| | || | || | Sbjct 166932 CAAACCTCCATTGAGATTGACTCCCTGTTTGAGGGTATTGATTTCTACACATCCATCACC 166873 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || | ||| || || | || |||||||| | || | ||||| || Sbjct 166872 CGTGCTAGATTCGAGGAGCTCTGCCAGGATCTCTTCCGTTCTACCACCACCCCAGTCGAT 166813 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | ||| | |||||||| || ||||| || || || || || | || || Sbjct 166812 CGGGTCCTCGCCGATGCCAAGATTGACAAGTCCAAGGTTCACGAGATCGTCTTGGTCGGA 166753 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAA 552191 || ||||| | || || || | ||| | | | | | ||| ||||| || || Sbjct 166752 GGTTCTACCCGTATCCCACGTATCCA-GAA--GCTCATTACCGATTACTTCAACGGCAAG 166696 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | || |||| | || || |||||||||||||| || ||||||||| | || | Sbjct 166695 GAGCCCAAC--AAGTCCATAAACCCTGATGAGGCTGTTGCGTACGGTGCCGCAGTCCAGG 166638 Query 552250 CAGCTATTCTTTCTGGACAAAC-TGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306 | || ||||| ||||| | || | || || | || || | || | || | || | Sbjct 166637 CTGCCATTCTATCTGGTGATACTTCATCTAAGAGCACTAACGAGATCCTTCTCCTCGACG 166578 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 || | || || ||||| ||| | || || | ||| || ||||| || || || | Sbjct 166577 TTGCCCCGCTCTCTCTCGGTATTGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCA 166518 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 |||| || || || ||| || || ||| || || ||||| | || ||||| ||| Sbjct 166517 GAAACACCACCATCCCTACCAAGAAGTCTGAGGTTTTCTCTACCTTCTCCGATAACCAAC 166458 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| |||| || ||| | ||||| ||||| | || ||| ||||| |||||| Sbjct 166457 CTGGTGTTCTCATCCAAGTCTTTGAGGGAGAGCGTCAACGCACGAAAGACAATAATTTGT 166398 Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 | || | || | | ||||| || || || |||||||| || || || || || | Sbjct 166397 TGGGCAAGTTCGAGCTCACTGGTATCCCACCCGCCCCTCGTGGTGTCCCACAGATCGAGG 166338 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||| || ||| |||||||||| ||||| |||| || ||||| ||| || Sbjct 166337 TTACCTTTGATCTCGATGCCAACGGAATCATGAACGTTTCTGCTCTTGAGAA 166286 Score = 109 bits (120), Expect = 4e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||||||||| || || | |||||| || |||||||| || || ||||| || | || Sbjct 167419 ACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCCACAAAGGATGCCGGTCTGATC 167360 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || |||||||| || || ||||| || || ||||| ||||| |||| || || Sbjct 167359 GCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCCTACGGT 167300 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 ||||| ||| | ||| || | |||||| |||||||| ||| ||| || Sbjct 167299 CTTGACAAAAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGG 167247 >seq67 Length=938763 Score = 105 bits (116), Expect = 5e-17 Identities = 116/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| |||||| ||| | | || || || ||||| || || || || || ||| || Sbjct 586759 GTTGGGCAAGAAAGTTGCCAAGGCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCA 586818 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||||||||| |||||||| |||||||| || || ||||| || || ||||| Sbjct 586819 ACGTCAAGCTACTAAGGATGCTGGTGCCATTGCTGGTCTCAACGTTCTCCGCATCATCAA 586878 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || ||||||||||| |||| || || || Sbjct 586879 CGAGCCAACTGCTGCTGCTATTGCCTACGGTCT 586911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029287326940360