Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq85 140 6e-28
seq145 123 5e-23
>seq85
Length=1171154
Score = 140 bits (154), Expect = 6e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189
|||||||||||| |||| | |||||||| ||| ||||||| ||||||||||| ||
Sbjct 1031308 GCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAG 1031367
Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249
||| ||||| | || | || || | |||||| || | ||||| || || ||||||||
Sbjct 1031368 ACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAA 1031427
Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309
||| ||||| || || || || || ||| | || |||| | || || ||| |||
Sbjct 1031428 GATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCTTATCTTG 1031487
Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
|||||| | |||||||| ||||||||||||||||| ||
Sbjct 1031488 GATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 1031529
Score = 93.3 bits (102), Expect = 8e-14
Identities = 171/250 (68%), Gaps = 3/250 (1%)
Strand=Plus/Plus
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | ||||| || ||| ||||||||||||||| | |||||| |
Sbjct 1031657 TCTCTGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTA 1031716
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
|||| || ||| | ||||| |||||| || ||||| ||||| || || || || ||||
Sbjct 1031717 CCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAG 1031776
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605
| ||||| ||||| || || | || | | ||| | || |||| ||||
Sbjct 1031777 CGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCC 1031836
Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665
|| | || | || ||| ||| || | |||||| | |||||||| || || ||| |
Sbjct 1031837 AGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCT 1031896
Query 48666 TTTTGTACAT 48675
| ||||||||
Sbjct 1031897 TCTTGTACAT 1031906
>seq145
Length=311005
Score = 123 bits (136), Expect = 5e-23
Identities = 648/1021 (63%), Gaps = 34/1021 (3%)
Strand=Plus/Minus
Query 213180 CCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAAT 213239
||||||| ||| || ||||| || | || |||||||| ||||||||| || ||
Sbjct 105876 CCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAAGGCAGCGTGGTAGATGGTCTCGAAG 105817
Query 213240 ATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCA-TCATCATGCGTTGGAA 213298
|||| | ||||| | |||||||| || ||| ||| || | || || | ||||
Sbjct 105816 ATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGGGAGTCGAAGAGC-TAGGAA 105758
Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-G 213357
||||| || || |||||||| || | | || |||||||| | | || |||| |
Sbjct 105757 GACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCG 105698
Query 213358 AGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCA 213417
|| ||| | ||||| ||||| ||||||||||||||| | ||| | | |
Sbjct 105697 TGC-CTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAA 105639
Query 213418 CTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------A 213471
| | | ||||| | || | || || || |||||| || || | |
Sbjct 105638 CCTGGCAGACATCGTGAAGCTTCT---GA---AAGTCGTAGCTGCCATCATTTTGGTTGA 105585
Query 213472 CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGT 213531
| | || || || | |||| ||| ||||| || ||||| | || | ||
Sbjct 105584 CGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGT 105525
Query 213532 ACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTG 213591
| || | ||||| ||||| || ||| || |||||||| || ||||||| || ||
Sbjct 105524 ATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTAC 105465
Query 213592 ACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACA 213651
|||| |||| || |||||||||||||||| | ||| |||||||| || | |
Sbjct 105464 TCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCT 105405
Query 213652 CCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA- 213710
| || || | ||| || | | |||||||| | || | | | | | |
Sbjct 105404 CGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATG----GTCTTGCGACCCTTGCCTTCT 105349
Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770
|||||||||| || ||||| | | ||||||| || | || | || || ||
Sbjct 105348 GCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGG 105289
Query 213771 CAGGATGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829
|| ||| ||||| || |||| || || || |||| || | || |||||| ||
Sbjct 105288 CACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA-ACACGCTTCATGAAGAG 105230
Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889
|| || | ||| || ||| ||| || || | | | || ||| ||| |||
Sbjct 105229 ATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTT 105170
Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949
|| || ||||| || || ||||||| || |||||||| ||||| | |||||| || ||
Sbjct 105169 CTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAA 105110
Query 213950 GGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCG 214006
|| || || | ||| || |||||||| || ||||| ||||||| | ||
Sbjct 105109 AGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCG 105050
Query 214007 CAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066
|| | || || | |||||||| | ||||| || || || || || | || | |||
Sbjct 105049 GAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGC 104990
Query 214067 CCTCAGGTTGCTCATGGAGA----GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGC 214122
| || | || |||| | | || || || || || | ||||||||||||||| |
Sbjct 104989 AC---GGATTCTG-TGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCAC 104934
Query 214123 AGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGC 214182
| | | | ||| || || ||| | || ||||| || | | || | ||||||||
Sbjct 104933 AAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGC 104874
Query 214183 A 214183
|
Sbjct 104873 A 104873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931530890357760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |