Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq85 140 6e-28 seq145 123 5e-23 >seq85 Length=1171154 Score = 140 bits (154), Expect = 6e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||||||||| |||| | |||||||| ||| ||||||| ||||||||||| || Sbjct 1031308 GCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAG 1031367 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||| ||||| | || | || || | |||||| || | ||||| || || |||||||| Sbjct 1031368 ACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAA 1031427 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || || || || ||| | || |||| | || || ||| ||| Sbjct 1031428 GATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTCCTTATCTTG 1031487 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||||| | |||||||| ||||||||||||||||| || Sbjct 1031488 GATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 1031529 Score = 93.3 bits (102), Expect = 8e-14 Identities = 171/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||| ||||||||||||||| | |||||| | Sbjct 1031657 TCTCTGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTA 1031716 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| || ||| | ||||| |||||| || ||||| ||||| || || || || |||| Sbjct 1031717 CCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAG 1031776 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | ||||| ||||| || || | || | | ||| | || |||| |||| Sbjct 1031777 CGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCC 1031836 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | || ||| ||| || | |||||| | |||||||| || || ||| | Sbjct 1031837 AGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCT 1031896 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 1031897 TCTTGTACAT 1031906 >seq145 Length=311005 Score = 123 bits (136), Expect = 5e-23 Identities = 648/1021 (63%), Gaps = 34/1021 (3%) Strand=Plus/Minus Query 213180 CCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAAT 213239 ||||||| ||| || ||||| || | || |||||||| ||||||||| || || Sbjct 105876 CCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAAGGCAGCGTGGTAGATGGTCTCGAAG 105817 Query 213240 ATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCA-TCATCATGCGTTGGAA 213298 |||| | ||||| | |||||||| || ||| ||| || | || || | |||| Sbjct 105816 ATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGGGAGTCGAAGAGC-TAGGAA 105758 Query 213299 CACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-G 213357 ||||| || || |||||||| || | | || |||||||| | | || |||| | Sbjct 105757 GACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCG 105698 Query 213358 AGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCA 213417 || ||| | ||||| ||||| ||||||||||||||| | ||| | | | Sbjct 105697 TGC-CTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAA 105639 Query 213418 CTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC------A 213471 | | | ||||| | || | || || || |||||| || || | | Sbjct 105638 CCTGGCAGACATCGTGAAGCTTCT---GA---AAGTCGTAGCTGCCATCATTTTGGTTGA 105585 Query 213472 CAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGT 213531 | | || || || | |||| ||| ||||| || ||||| | || | || Sbjct 105584 CGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGGTGCACAGT 105525 Query 213532 ACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTG 213591 | || | ||||| ||||| || ||| || |||||||| || ||||||| || || Sbjct 105524 ATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTAC 105465 Query 213592 ACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACA 213651 |||| |||| || |||||||||||||||| | ||| |||||||| || | | Sbjct 105464 TCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCT 105405 Query 213652 CCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA- 213710 | || || | ||| || | | |||||||| | || | | | | | | Sbjct 105404 CGAGGATGGAGTACCAAAGCTTCTGGGCCTTGATG----GTCTTGCGACCCTTGCCTTCT 105349 Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770 |||||||||| || ||||| | | ||||||| || | || | || || || Sbjct 105348 GCCTCGTACTTCTCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGG 105289 Query 213771 CAGGATGCGGGACACATGAGGCTCCA-GTCCCCGTCATCTCTGACTCTCTGCATGAACAG 213829 || ||| ||||| || |||| || || || |||| || | || |||||| || Sbjct 105288 CACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA-ACACGCTTCATGAAGAG 105230 Query 213830 GTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 || || | ||| || ||| ||| || || | | | || ||| ||| ||| Sbjct 105229 ATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTT 105170 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || || ||||| || || ||||||| || |||||||| ||||| | |||||| || || Sbjct 105169 CTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAA 105110 Query 213950 GGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCG 214006 || || || | ||| || |||||||| || ||||| ||||||| | || Sbjct 105109 AGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCG 105050 Query 214007 CAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGC 214066 || | || || | |||||||| | ||||| || || || || || | || | ||| Sbjct 105049 GAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGC 104990 Query 214067 CCTCAGGTTGCTCATGGAGA----GCCCTATGCCACCGGCGTACTTGGAGATCATGGCGC 214122 | || | || |||| | | || || || || || | ||||||||||||||| | Sbjct 104989 AC---GGATTCTG-TGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCAC 104934 Query 214123 AGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGC 214182 | | | | ||| || || ||| | || ||||| || | | || | |||||||| Sbjct 104933 AAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGC 104874 Query 214183 A 214183 | Sbjct 104873 A 104873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530890357760