Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq145 203 6e-47
seq85 125 1e-23
>seq145
Length=311005
Score = 203 bits (224), Expect = 6e-47
Identities = 618/936 (66%), Gaps = 53/936 (6%)
Strand=Plus/Minus
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATG-----ATCTCTGTAC 221768
|||| |||||| || || |||||||| ||| || |||| |||||||| |
Sbjct 105561 GCCAAGTTACAAACAGCGACCTCGTCA-----GGTGCACAGTATTCAACTATCTCTGTGC 105507
Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828
|||| ||| || |||||| || |||| || |||||| ||| || ||| ||| |
Sbjct 105506 AGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCAT 105447
Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888
||||||||||||| || || || ||||| || ||| | || || || ||| |
Sbjct 105446 CCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAA 105387
Query 221889 GTTCTCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCG 221941
| | ||||| || | ||| | |||| || | ||||| ||| |||||
Sbjct 105386 GCT-TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAG--- 105331
Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001
||||| | |||| | |||||||| | || | || || || ||| | |||
Sbjct 105330 ----AGAGCCT--CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGG 105277
Query 222002 CACATCAGACTCCA-GTGC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058
|||||||| |||| || | || || || || | || ||||||||| || || |||
Sbjct 105276 CACATCAGTGTCCATGTACCATTCTTCTCA---ACACGCTTCATGAAGAGATCTGGAATC 105220
Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118
|| || || | |||||||| | | || |||||| |||| ||| || | |||
Sbjct 105219 CATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGA 105160
Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178
|| | |||||||| | ||||||||||| ||||| || |||| || | ||| || ||
Sbjct 105159 TCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGG 105100
Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCG 222236
||||| || |||||||| | || ||| ||| | | | |||||| | || || | |
Sbjct 105099 CGCTTATTTCCACCCTGGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAG 105042
Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296
| || | |||||||| ||||| ||||| |||||| || || ||| | ||
Sbjct 105041 GAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGA 104985
Query 222297 TACT---GGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353
| || | || || |||||||| || || | || ||||||||||| || ||||||
Sbjct 104984 TTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGA 104925
Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413
|||| || || || || ||| ||||||||| | || | || || || || || |
Sbjct 104924 GAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGA 104865
Query 222414 TCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCC 222472
|| | || |||| | | |||| ||| || || ||| ||||||||||||||
Sbjct 104864 GTTGTGCTTGTGGT-GTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTG 104806
Query 222473 CTAGACATCAGATCGTACGTCTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA 222530
|| ||||| | || ||| ||||| || ||||| | || | ||||||||||| |
Sbjct 104805 CTGGACATTAAATTGTATGTCTCGATAGCACTCT--CAATATCATCCCCGTGAATACCGA 104748
Query 222531 TGGCGCATCTCATGTACATGTACTGGGGCC--TCTCCACAGGACCCTTGGAGCTGGAGAG 222588
|| ||||||| ||||| || || | || || || | ||| |||||
Sbjct 104747 CAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGA- 104689
Query 222589 CAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624
||||| ||| | || ||||||||||| ||||||||
Sbjct 104688 -AGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTA 104654
>seq85
Length=1171154
Score = 125 bits (138), Expect = 1e-23
Identities = 335/515 (65%), Gaps = 7/515 (1%)
Strand=Plus/Minus
Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869
||| ||||||||| |||||| |||||| | | |||||| | || | ||||
Sbjct 1031529 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 1031470
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| | |||| || || |||||||| ||||| ||||| ||||| ||| |||||| ||
Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
|| | || |||||| | ||| || || ||||| || || ||| |||||||||
Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049
|||||| | | ||||| |||||||||| || ||||||||||| | | | | ||||
Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCAC 1031293
Query 26050 TTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGAT 26108
||| ||| || |||| | | ||| | | || | |||||||| |||||
Sbjct 1031292 TTGAACCATCGTCC-AAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 1031234
Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACT 26168
|||| | ||||| | ||||||||| |
Sbjct 1031233 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 1031174
Query 26169 CATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAG 26228
|||| ||||||||||||| || || || | |||||| | || || || |
Sbjct 1031173 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 1031114
Query 26229 ACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287
||| ||| |||| ||||| |||||||| ||||| ||||| || | | || ||||
Sbjct 1031113 GTATTACAAGTCCGCC-AACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGA 1031055
Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
|||||||||| || ||| | |||| |||||| |||
Sbjct 1031054 CCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAA 1031020
Score = 102 bits (112), Expect = 2e-16
Identities = 165/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | ||| ||||||||||||||| |||||||||
Sbjct 1031915 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 1031856
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG---CATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| ||||| || | ||| ||
Sbjct 1031855 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 1031796
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | |||||||| || || ||||| || || || |||||||| || ||| ||
Sbjct 1031795 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCGA 1031736
Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||| | | || || || |||| | ||||| || |||||||| ||||| ||
Sbjct 1031735 TTCAGCGGAGAGGTCCAGGTACCT-GAGGCTCGCTGCTTCTACGGGTTCCAAAT 1031683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928842895868160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |