Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq145 203 6e-47 seq85 125 1e-23 >seq145 Length=311005 Score = 203 bits (224), Expect = 6e-47 Identities = 618/936 (66%), Gaps = 53/936 (6%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATG-----ATCTCTGTAC 221768 |||| |||||| || || |||||||| ||| || |||| |||||||| | Sbjct 105561 GCCAAGTTACAAACAGCGACCTCGTCA-----GGTGCACAGTATTCAACTATCTCTGTGC 105507 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 |||| ||| || |||||| || |||| || |||||| ||| || ||| ||| | Sbjct 105506 AGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCAT 105447 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||||||||| || || || ||||| || ||| | || || || ||| | Sbjct 105446 CCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAA 105387 Query 221889 GTTCTCTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCG 221941 | | ||||| || | ||| | |||| || | ||||| ||| ||||| Sbjct 105386 GCT-TCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAG--- 105331 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||||| | |||| | |||||||| | || | || || || ||| | ||| Sbjct 105330 ----AGAGCCT--CAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGG 105277 Query 222002 CACATCAGACTCCA-GTGC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATC 222058 |||||||| |||| || | || || || || | || ||||||||| || || ||| Sbjct 105276 CACATCAGTGTCCATGTACCATTCTTCTCA---ACACGCTTCATGAAGAGATCTGGAATC 105220 Query 222059 CACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGA 222118 || || || | |||||||| | | || |||||| |||| ||| || | ||| Sbjct 105219 CATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGA 105160 Query 222119 TCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGT 222178 || | |||||||| | ||||||||||| ||||| || |||| || | ||| || || Sbjct 105159 TCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGG 105100 Query 222179 CGCTTGTTGCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCG 222236 ||||| || |||||||| | || ||| ||| | | | |||||| | || || | | Sbjct 105099 CGCTTATTTCCACCCTGGT-CAACAT-ATCTGGCTGTGTTGTTGAAAACTCGGAGCATAG 105042 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 | || | |||||||| ||||| ||||| |||||| || || ||| | || Sbjct 105041 GAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC---GGA 104985 Query 222297 TACT---GGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 | || | || || |||||||| || || | || ||||||||||| || |||||| Sbjct 104984 TTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGA 104925 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 |||| || || || || ||| ||||||||| | || | || || || || || | Sbjct 104924 GAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGA 104865 Query 222414 TCTGAGATT-TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCC 222472 || | || |||| | | |||| ||| || || ||| |||||||||||||| Sbjct 104864 GTTGTGCTTGTGGT-GTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTG 104806 Query 222473 CTAGACATCAGATCGTACGTCTC--TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA 222530 || ||||| | || ||| ||||| || ||||| | || | ||||||||||| | Sbjct 104805 CTGGACATTAAATTGTATGTCTCGATAGCACTCT--CAATATCATCCCCGTGAATACCGA 104748 Query 222531 TGGCGCATCTCATGTACATGTACTGGGGCC--TCTCCACAGGACCCTTGGAGCTGGAGAG 222588 || ||||||| ||||| || || | || || || | ||| ||||| Sbjct 104747 CAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGA- 104689 Query 222589 CAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||||| ||| | || ||||||||||| |||||||| Sbjct 104688 -AGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTA 104654 >seq85 Length=1171154 Score = 125 bits (138), Expect = 1e-23 Identities = 335/515 (65%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||||||| |||||| |||||| | | |||||| | || | |||| Sbjct 1031529 CCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTACA 1031470 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || | |||| || || |||||||| ||||| ||||| ||||| ||| |||||| || Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | || |||||| | ||| || || ||||| || || ||| ||||||||| Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | | ||||| |||||||||| || ||||||||||| | | | | |||| Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTC---CCAC 1031293 Query 26050 TTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGAT 26108 ||| ||| || |||| | | ||| | | || | |||||||| ||||| Sbjct 1031292 TTGAACCATCGTCC-AAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGAT 1031234 Query 26109 CGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACT 26168 |||| | ||||| | ||||||||| | Sbjct 1031233 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 1031174 Query 26169 CATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAG 26228 |||| ||||||||||||| || || || | |||||| | || || || | Sbjct 1031173 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 1031114 Query 26229 ACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 ||| ||| |||| ||||| |||||||| ||||| ||||| || | | || |||| Sbjct 1031113 GTATTACAAGTCCGCC-AACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGA 1031055 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||||| || ||| | |||| |||||| ||| Sbjct 1031054 CCAACTTCTTCGAGAAGCGTGTCGCCGACTACCAA 1031020 Score = 102 bits (112), Expect = 2e-16 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| ||||||||||||||| ||||||||| Sbjct 1031915 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 1031856 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG---CATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| ||||| || | ||| || Sbjct 1031855 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 1031796 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | |||||||| || || ||||| || || || |||||||| || ||| || Sbjct 1031795 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCGA 1031736 Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || || |||| | ||||| || |||||||| ||||| || Sbjct 1031735 TTCAGCGGAGAGGTCCAGGTACCT-GAGGCTCGCTGCTTCTACGGGTTCCAAAT 1031683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842895868160