Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq85 111 1e-18 seq52 107 1e-17 seq58 100 2e-15 >seq85 Length=1171154 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || |||||||| ||| || || | |||||||||| | || Sbjct 581066 ACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGT 581007 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||||||||||||||| ||||| || | || || || || || || || Sbjct 581006 ACGGCCATCCTCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACC 580947 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || |||||| ||||| ||||||||||||| || | | || | Sbjct 580946 CTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGA-CCTCGA 580888 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| |||||||| |||||||| || Sbjct 580887 GTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTG 580848 Score = 87.8 bits (96), Expect = 1e-11 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | || || | | |||||| ||||||||||| || || || | |||||| Sbjct 580795 TTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGC 580736 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| ||||| || || ||||||||||| ||||| |||||| || || ||||| Sbjct 580735 TGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCG 580676 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 | || | | ||| || || || || || || || |||||||| |||| Sbjct 580675 GATGATTCGA-CTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 580627 >seq52 Length=538554 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || |||||||| || || ||||| |||||||| || ||||| ||||| || || Sbjct 345627 TTACCGTCCCAGCATACTTCAACGATTCGCAACGTCAGGCTACTAAGGATGCTGGTCAAA 345568 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||||||||| ||| | ||| | | || || ||||| || ||||| |||||||||| Sbjct 345567 TTGCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCCGCTCTTGCTTATG 345508 Query 474864 GTCTTGATAAGAATTCTGACAA 474885 | | || ||| || ||||| Sbjct 345507 GGTTGGAGAAGGATGAAGACAA 345486 >seq58 Length=1028984 Score = 100 bits (110), Expect = 2e-15 Identities = 126/172 (73%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||| || || ||||||||||| || || | |||||| || || || || Sbjct 907479 AGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCGGGGGGG 907420 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 ||||| |||||||| || ||||| |||||| ||||| ||||| | | || | Sbjct 907419 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAG---GACTCT 907363 Query 480726 ---TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACG 480774 || |||||||| || || ||||||||||| || ||||| | ||||||| Sbjct 907362 ACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAAGCTATGGAACG 907311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268172165244272