Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq85 111 1e-18
seq52 107 1e-17
seq58 100 2e-15
>seq85
Length=1171154
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| || || || |||||||| ||| || || | |||||||||| | ||
Sbjct 581066 ACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGT 581007
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||||||||||||||| ||||| || | || || || || || || ||
Sbjct 581006 ACGGCCATCCTCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACC 580947
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || |||||| ||||| ||||||||||||| || | | || |
Sbjct 580946 CTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGA-CCTCGA 580888
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || ||||| |||||||| |||||||| ||
Sbjct 580887 GTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTG 580848
Score = 87.8 bits (96), Expect = 1e-11
Identities = 123/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| ||||| | || || | | |||||| ||||||||||| || || || | ||||||
Sbjct 580795 TTGTAATCGGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGC 580736
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
||||| ||||| || || ||||||||||| ||||| |||||| || || |||||
Sbjct 580735 TGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCG 580676
Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
| || | | ||| || || || || || || || |||||||| ||||
Sbjct 580675 GATGATTCGA-CTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 580627
>seq52
Length=538554
Score = 107 bits (118), Expect = 1e-17
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
|||| || |||||||| || || ||||| |||||||| || ||||| ||||| || ||
Sbjct 345627 TTACCGTCCCAGCATACTTCAACGATTCGCAACGTCAGGCTACTAAGGATGCTGGTCAAA 345568
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
||||||||||||| ||| | ||| | | || || ||||| || ||||| ||||||||||
Sbjct 345567 TTGCAGGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCCGCTCTTGCTTATG 345508
Query 474864 GTCTTGATAAGAATTCTGACAA 474885
| | || ||| || |||||
Sbjct 345507 GGTTGGAGAAGGATGAAGACAA 345486
>seq58
Length=1028984
Score = 100 bits (110), Expect = 2e-15
Identities = 126/172 (73%), Gaps = 6/172 (3%)
Strand=Plus/Minus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||||| | ||| || || ||||||||||| || || | |||||| || || || ||
Sbjct 907479 AGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCGGGGGGG 907420
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725
||||| |||||||| || ||||| |||||| ||||| ||||| | | || |
Sbjct 907419 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAG---GACTCT 907363
Query 480726 ---TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACG 480774
|| |||||||| || || ||||||||||| || ||||| | |||||||
Sbjct 907362 ACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAAGCTATGGAACG 907311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268172165244272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |