Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq145 109 3e-19 >seq145 Length=311005 Score = 109 bits (120), Expect = 3e-19 Identities = 268/400 (67%), Gaps = 6/400 (2%) Strand=Plus/Minus Query 25914 CATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973 |||| | |||||| || ||| || | |||||||||||| | || || || | ||| | Sbjct 105257 CATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGC 105198 Query 25974 TCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTG 26033 || | | ||| || |||||||| |||||| ||||| | ||| ||||| | ||| | Sbjct 105197 GAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAG 105138 Query 26034 AGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTA 26093 ||||||||| || | ||||| || ||| ||| | || |||||| || || | Sbjct 105137 CGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAA 105078 Query 26094 CGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCG 26152 | ||||| || || | ||||||||| | ||| ||||| ||| | |||| | | ||| Sbjct 105077 CATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAAC-AATACCGTTGGAGTTCCCG 105019 Query 26153 TTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCA 26212 ||||||| | ||| | | ||| || | | || ||| ||| | |||||| || Sbjct 105018 TTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATACCT 104959 Query 26213 CCAGCCCATTTTGAAATAGCTGCACAA-TC-TGAAACTGTATCGAAAATTCCTTTTATGC 26270 ||||| || || || |||||| || ||| | |||||| |||| || | || | Sbjct 104958 CCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGA--GTATCGTAAATCCCGTCGATAC 104901 Query 26271 TATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTG 26310 | || | ||||| | | || || || ||||| | ||| Sbjct 104900 TGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTG 104861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039494236300