Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq145 311 1e-79 seq85 140 4e-28 >seq145 Length=311005 Score = 311 bits (344), Expect = 1e-79 Identities = 1170/1808 (65%), Gaps = 39/1808 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || ||||||| || | || |||| || ||||| |||| | Sbjct 104654 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGGCAAGATTGC 104712 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| ||||| ||||| | || || |||| || |||||||| || ||||| Sbjct 104713 CGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATATTGA 104772 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || | ||||||||| | |||||| |||| | | || ||||| | ||| Sbjct 104773 GAGTGCTATCGAGACATACAATTTAATGTCCAGCAAGTACTTTACA--CACGCGTCTCCA 104830 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 |||||||| || || |||||| | | || | || |||||| | |||| || Sbjct 104831 ACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACATG 104890 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| ||| |||| || || | ||||| | | ||||| ||||| ||| Sbjct 104891 AAGGAGGACAGTATCGACGGGATTTACGATACTCTCAAGACTTGTGCCATGATCTCCAAG 104950 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||||| ||||| || || | |||| | | |||| | | || ||| Sbjct 104951 AATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATTGCT 105010 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || | || | |||||| |||| ||||| || || || ||| |||||| Sbjct 105011 GGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCC 105070 Query 75563 CGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 | ||||| | || | || | ||| || | ||||| ||||| | || ||| Sbjct 105071 AGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCA 105130 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || ||| || | ||||||||||| | ||| ||||| || | || || | | Sbjct 105131 TGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTT 105190 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | |||||||| | | || ||||||||||| || ||||||||||| |||||| Sbjct 105191 CGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAG 105250 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || |||| |||| | || | || || || || || ||||| | || | Sbjct 105251 AAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTAC 105310 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAG-AGGAGGGTAGAG--CCAATGCG 75856 ||||| || ||||| || ||||| ||||| || | || ||| || | ||| | Sbjct 105311 GGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAA---G 105367 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | | || | | || | ||||| | | || ||| | | || || ||||| |||| Sbjct 105368 ACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAA 105426 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || | ||||| |||||||||||||| ||| |||||||| || ||||| | || || Sbjct 105427 CCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTGGTAC 105486 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||| ||||| ||||| ||||| || || | || ||| | || ||| || Sbjct 105487 CATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAATACTGTGCACCTGACGAGGTCGC 105546 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTT 76095 |||||| || ||||| || | || || |||| || ||||| || | | ||| | Sbjct 105547 TGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGTCAACCAAAATGATGGCAGCTA 105606 Query 76096 TGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCAT 76155 || | | | || ||||| || || || |||| || || | ||| |||| Sbjct 105607 CGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAACAAGATCAT 105666 Query 76156 TGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 |||| || | || || ||| ||| || || ||| ||| | || |||||||| Sbjct 105667 CGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGTCACAGACC 105723 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT-TTTGTGCCGCTACGCATTTG 76271 ||||| | | ||||| || |||||||| ||||| || | | | | || | |||| | Sbjct 105724 TATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACT-CCCATTCG 105782 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | ||| || ||||| | | ||| | ||||| || ||||| || ||||| | || Sbjct 105783 AGTCACCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCACGC-TGCC 105841 Query 76332 TGGAGGCGAGTTG-TGAATTGGCTGAAGC-CCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 | || | || ||| | || |||| || ||| | || ||||||| || ||||| Sbjct 105842 TTGACTTCATCTGTTGAGCTTGC-AAAGCAGCATGGTACTTACGAGACATACGAAGGTTC 105900 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAAC 76447 || || || ||||| | ||| || | ||||||| ||||||| | ||| | | || Sbjct 105901 CCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTACCGATC-TT 105958 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | ||||||| | ||| ||| |||||| || | ||||||||||||||| | | Sbjct 105959 TGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAGTTTGCTC 106018 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || |||||||| ||| ||| |||||| | || || || || || || Sbjct 106019 GTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTGTTTCGAG 106078 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 ||||||||| | ||||||||| || | | | || ||||| || | || ||| Sbjct 106079 CCATACACATCCAACATCTACTCCCGACGTGTCTTGGCTGGTGAATTCCAAGTCGTTAAC 106138 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 | | || || || | || ||||||||||| | | |||||| | | Sbjct 106139 CCTTGGTTGTTGAAGGATCTTGTCGATATGGGTCTCTGGTCAGATAACATGAAGAACCGT 106198 Query 76688 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || | | || |||||||| |||||| || | |||| || | ||||||||| | Sbjct 106199 ATCATCGCCGATGGAGGTTCCATCCAAAATGTCCCTAATATTCCTGCCGATATCAAGGCT 106258 Query 76748 CTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCAGAT 76804 || ||| || || ||||| || | || | | | || || | ||||| || ||| Sbjct 106259 CTTTACAAGACTGTCTGGGAGATCTCCCAG-CGTACCA--TCGTTCAGATGGCTGCTGAT 106315 Query 76805 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATG 76864 |||||| |||||| || || ||| ||||| | |||| | |||||| ||| Sbjct 106316 CGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAACTATG 106375 Query 76865 TCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTAC 76924 |||| || | |||||| | | ||||| ||| || || ||||| |||||| Sbjct 106376 GGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGGCATGTAC 106435 Query 76925 TATCTCCG 76932 || ||||| Sbjct 106436 TACCTCCG 106443 >seq85 Length=1171154 Score = 140 bits (154), Expect = 4e-28 Identities = 303/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||| |||| || |||| ||||| ||| |||||||||||||||||||| |||||| Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | |||| | |||||||||||||| ||||| |||||||| || |||||| || || Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGC-TCTTCAAGACTTT 65249 || || ||||| || || ||||||||| || |||||| || | | ||| || Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCC-TGCCTCTTGTTCTCCCACTT 1031291 Query 65250 GCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309 | || | || | | || | |||| | | | | | ||||| |||||||| || Sbjct 1031290 GAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGA 1031231 Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369 | ||| |||| | || || || || ||| ||| |||| |||||| ||| ||| Sbjct 1031230 GCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGAT 1031171 Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCAT 65429 | | |||||||||| || | |||||||| ||| | | || | | | Sbjct 1031170 GAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTC-CTCGCTCTCGGTAACGAGAAGT 1031112 Query 65430 -TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCA 65488 || || | || ||||| ||||| ||||| ||||| |||| || ||||||| Sbjct 1031111 ATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGACCA 1031052 Query 65489 ACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||| |||||||| || | ||||| Sbjct 1031051 ACTTCTTCGAGAAGCGTGTCGCCGACTA 1031024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568377032320