Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq85 181 1e-40 seq67 141 1e-28 seq58 131 2e-25 seq52 125 9e-24 seq105 105 9e-18 seq72 102 1e-16 seq112 95.1 2e-14 >seq85 Length=1171154 Score = 181 bits (200), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || || || || ||||| || ||||| |||||||| || | Sbjct 580840 GTGGTATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAAT 580899 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || || |||||| |||| | ||||| || || ||||| || || ||||||| Sbjct 580900 CATCTGATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCG 580959 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| |||| ||||| ||||| || || ||||| ||||| |||||| | |||||| Sbjct 580960 ACCAGCAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATT 581019 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||| | || |||||||||||||| || || ||||| | ||||| |||||| Sbjct 581020 ATAACATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGT 581072 Score = 181 bits (200), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || | |||||||| ||||| || || || ||||||| Sbjct 581068 GTGGTATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGT 581127 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| ||||||||||| ||| |||| ||||||| || |||||||| || || ||||||| Sbjct 581128 CGTCTGACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCG 581187 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| |||| |||||||||||||| ||| | || ||||| || || | || | Sbjct 581188 ACCAGCAGAGACTAATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACT 581247 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| | || |||||||||||||| || || || | | ||||| || ||| Sbjct 581248 ACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCGTGGAGGT 581300 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || || |||||||| || || ||||| ||||| || || || || || || ||||| Sbjct 580629 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 580688 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 || |||| | ||||| ||||| ||||| ||||| || |||||||||||||| | || Sbjct 580689 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATC 580748 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || || || || || || |||||||| || ||||| | ||||||||| | || |||||| Sbjct 580749 TTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGAG 580808 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| ||| | || || | || || |||||| Sbjct 580809 TCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGT 580844 >seq67 Length=938763 Score = 141 bits (156), Expect = 1e-28 Identities = 194/269 (72%), Gaps = 19/269 (7%) Strand=Plus/Plus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| ||||||| || ||||| || || || ||||| |||| ||| ||| Sbjct 586790 ACTGTCCCTGCCTACTTCAACGACAACCAACGTCAAGCTACTAAGGATGCTGGTGCCATT 586849 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || ||||| ||| ||| | || ||||| || ||||| || ||||| ||||| || ||| Sbjct 586850 GCTGGTCTCAACGTTCTCCGCATCATCAACGAGCCAACTGCTGCTGCTATTGCCTACGGT 586909 Query 195839 CT-------GGACAAG---AACAAGGA-CGAAGATAAAAATGTATTGATCTTTGATCTCG 195887 || ||| ||| |||||||| |||| |||| ||||||| ||||| | Sbjct 586910 CTCGGTGCCGGA-AAGTCCAACAAGGAGCGAA-------ATGTCTTGATCTACGATCTTG 586961 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 | || || || ||||||||||| ||||| || || | |||||| | ||| || |||| Sbjct 586962 GAGGAGGAACTTTTGATGTCTCTCTTCTTAACATCCAGGGTGGTGTTTTCACTGTCAAGG 587021 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGT 195976 | || ||||| ||||| ||||| || ||| Sbjct 587022 CCACCGCTGGAGATACGCATCTCGGCGGT 587050 Score = 132 bits (146), Expect = 6e-26 Identities = 266/387 (69%), Gaps = 18/387 (5%) Strand=Plus/Plus Query 196039 AGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAA 196098 |||||| ||||| | || | ||||| | || || | || ||||| || |||||||| Sbjct 587325 AGATATGTCTGGTGACCCCCGTGCTCTGAGACGTCTCCGCACCGCATGCGAGCGTGCCAA 587384 Query 196099 ACGAACTCTCTCTTCTACGG--CTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGA 196156 |||| |||||| |||| ||||||| | || || || || || | || ||||| Sbjct 587385 GAGAACCCTCTCTA--ACGGTGCTCAAACCACTGTCGAAATCGACTCCCTCTTCGACGGT 587442 Query 196157 ATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTT 196216 |||||| || | || |||||||| ||||| || || | ||||| | || Sbjct 587443 GAGGACTTCAATGCCCAGATCACCCGTGCCCGTTTCGAGGATCTTAACTCCAAGGCCTTC 587502 Query 196217 A--GGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTA 196274 | || | | || || || |||| || || ||| || || || || |||||| | Sbjct 587503 AATGGCACTTTA--GAGCCAGTTGCCCAGGTCCTTAAGGATGCCAACATCGATAAGAGCA 587560 Query 196275 AGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGC 196334 ||||||| || || |||||||| || ||||| || ||||| || ||||| || || || Sbjct 587561 AGGTTGACGAGATCGTCCTTGTCGGTGGATCTACACGTATCCCAAAGATCCA---GAAGC 587617 Query 196335 TTTCTAGC---TTCTTCAAT--AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389 | | ||| |||||| || || ||| || | | | | |||||||| ||||| || Sbjct 587618 TCTTGAGCGACTTCTTCGATGGAAAGAAGCTTGAGA--AGAGCATCAACCCCGATGAGGC 587675 Query 196390 AGTTGCTTATGGTGCGGCCGTTCAGGC 196416 |||||||||||||| ||||| ||||| Sbjct 587676 TGTTGCTTATGGTGCTGCCGTGCAGGC 587702 >seq58 Length=1028984 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929 ||| || ||||| || || ||||| || || ||||||||||| ||||| || || || || Sbjct 907321 CTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGAT 907380 Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989 || || |||| ||||||| || || ||||| || || || ||||| |||||||| | Sbjct 907381 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 907440 Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049 || || ||||| || ||||| || ||||| || || || | || |||||| ||||||| Sbjct 907441 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 907500 Query 172050 GG 172051 || Sbjct 907501 GG 907502 >seq52 Length=538554 Score = 125 bits (138), Expect = 9e-24 Identities = 228/330 (69%), Gaps = 14/330 (4%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || ||| | | || | | || | || ||||| || Sbjct 345682 AAGATGAAGGAGACCGCCGAGGCTTACCTCACAAAGCCAATTCAAAACGCCGTTGTTACC 345623 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| ||||| ||||| ||||| || ||||| |||| | ||||| Sbjct 345622 GTCCCAGCATACTTCAACGATTCGCAACGTCAGGCTACTAAGGATGCTGGTCAAATTGCA 345563 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| ||| | | |||| || ||||| || || || |||||||||| || Sbjct 345562 GGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCCGCTCTTGCTTATGGGTTG 345503 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTG--ATCTTTGATCTCGGTGGTGGTACGT 195899 | | ||||| ||||| || | ||||| ||| |||||| ||||| || || | Sbjct 345502 G------AGAAGGATGAAGACAAGA--TTATTGCTGTCTATGATCTTGGTGGAGGAACCT 345451 Query 195900 TTGATGTCTCACTTCTCAATAT--TGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 ||||| |||| |||| | || |||| ||| ||||||| || ||| | || || Sbjct 345450 TTGATATCTCCGTTCTTGAGATCCAGAAG--GGTGTATTCGAGGTCAAGTCCACCAACGG 345393 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||| ||||| | ||||| || ||||| || Sbjct 345392 TGACACTCACTTGGGTGGAGAGGATTTTGA 345363 >seq105 Length=2038561 Score = 105 bits (116), Expect = 9e-18 Identities = 221/327 (68%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||| || ||||| | | | || | | || | | || ||||| || Sbjct 1646650 AAGATGAAGGATGTCGCCGAATCATACCTCGGACACAAGGTTACCCACGCCGTTGTTACC 1646591 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || |||| || || |||||||| | || ||| || Sbjct 1646590 GTCCCCGCATACTTCAACGACAACCAGAGACAAGCTACCAAGGACGCCGGTGTTATCGCC 1646531 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||| | ||| ||| | ||| |||| ||||| || || || || || || || || || Sbjct 1646530 GGTTTGAACGTCCTTCGTATTGTCAACGAACCTACCGCCGCAGCTATCGCATACGGACTT 1646471 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 ||||||| | ||| || | ||| |||| ||| ||||||||||| || || || Sbjct 1646470 GACAAGACCGAGGGAGAGCGTCAAA--TCATTG-TCTACGATCTCGGTGGCGGAACCTTC 1646414 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||||| || || | ||||| ||||| | ||||| || | || |||||||| Sbjct 1646413 GATGTTTCCCTCTTGTCCATTGATCGTGGTGTTTTCGAGGTTCTCTCAACCGCTGGTGAC 1646354 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || | || || |||||||||||| Sbjct 1646353 ACCCACTTGGGAGGAGAAGATTTCGAT 1646327 >seq72 Length=838791 Score = 102 bits (112), Expect = 1e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 172602 TCTATATGGACGTGTAGCCCCACGTTCCGGTCTAGCTGTGAAGCACTGTATCAATGTCGG 172661 |||| |||| ||| |||| ||||| || ||||| ||| ||||| ||| | || Sbjct 248155 TCTAGATGGTCGTATAGCGCCACGCTCGGGTCTTGCTTCTAAGCATATGATCGACACGGG 248214 Query 172662 TGCAGGTGTTATTGATCCTGATTACACTGGTGAAGTCAAGGTCGTCCTATTCAATCATGG 172721 ||||| || |||||| | ||||| |||| | || ||||| | ||||||||||| || Sbjct 248215 CGCAGGAGTCATTGATGCAGATTATCGTGGTCAGGTTAAGGTTCTGCTATTCAATCACGG 248274 Query 172722 TACGGAAGACTTTGAAATCAAGAAGGGTGATCGTATCGCTCAACTTATTTTGGAAAGGTG 172781 | | ||||| ||| ||||| |||| |||||||| || || || || ||||| ||| Sbjct 248275 CGAGAAGGACTTCGAAGTCAAGGAGGGAGATCGTATTGCACAGCTGATCTTGGAGAGGAT 248334 Query 172782 TGATACACC 172790 | | ||||| Sbjct 248335 TTACACACC 248343 >seq112 Length=507387 Score = 95.1 bits (104), Expect = 2e-14 Identities = 207/296 (70%), Gaps = 18/296 (6%) Strand=Plus/Plus Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536 || ||||| || ||| |||| | |||||||| | || | ||||| |||| | | Sbjct 131261 GCAAAGGAGGAACTCCAGGAATTGGTTGATTTCTTGAAGAGTCCCGAGAAGTTCGCTACG 131320 Query 198537 AGTGGTGCCCGAA----TCCCACGTGGTGCTCTT-CTCGCCGGTGCCCCGGGTACTGGTA 198591 ||||| ||| ||||| | |||| |||| |||| |||| | || |||||||| | Sbjct 131321 CTTGGTG---GAAAGCTTCCCAAG-GGTG-TCTTGCTCGTCGGTCCTCCTGGTACTGGAA 131375 Query 198592 AAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTT--TCTTCAGTGCTC 198649 |||| ||||| || || ||| | || || ||| | ||||||| || |||| | || || Sbjct 131376 AAACGCTTCTCGCACGCGCTGTTGCTGGCGAAGCCGGTGTCCCGTTCTTCTTTA-TG-TC 131433 Query 198650 CGCGGC-GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCT 198708 | | ||||| | |||| | | |||||||||||| |||||||| ||||| ||||| | Sbjct 131434 GGGATCTGAGTTCGA-CGAGGTTTACGTTGGTGTTGGAGCTAAGCGTGTCCGTGAACTAT 131492 Query 198709 TTG-AGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGC 198763 | | ||| || | ||| ||||| ||| ||||||| || ||| |||| || Sbjct 131493 TCGCAGC-TGCGAAAGGAAAACAACCTGCCATCGTCTTCATCGACGAGCTTGATGC 131547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861051382080