Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq85 181 1e-40
seq67 141 1e-28
seq58 131 2e-25
seq52 125 9e-24
seq105 105 9e-18
seq72 102 1e-16
seq112 95.1 2e-14
>seq85
Length=1171154
Score = 181 bits (200), Expect = 1e-40
Identities = 180/233 (77%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| || || || || || || || ||||| || ||||| |||||||| || |
Sbjct 580840 GTGGTATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAAT 580899
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || || || || |||||| |||| | ||||| || || ||||| || || |||||||
Sbjct 580900 CATCTGATACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCG 580959
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| |||| ||||| ||||| || || ||||| ||||| |||||| | ||||||
Sbjct 580960 ACCAGCAGAGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATT 581019
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| ||| | || |||||||||||||| || || ||||| | ||||| ||||||
Sbjct 581020 ATAACATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGT 581072
Score = 181 bits (200), Expect = 1e-40
Identities = 180/233 (77%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||| || || || | |||||||| ||||| || || || |||||||
Sbjct 581068 GTGGTATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGT 581127
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
|||| ||||||||||| ||| |||| ||||||| || |||||||| || || |||||||
Sbjct 581128 CGTCTGACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCG 581187
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| |||| |||||||||||||| ||| | || ||||| || || | || |
Sbjct 581188 ACCAGCAGAGACTAATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACT 581247
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| | || |||||||||||||| || || || | | ||||| || |||
Sbjct 581248 ACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCGTGGAGGT 581300
Score = 150 bits (166), Expect = 2e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933
|| || || |||||||| || || ||||| ||||| || || || || || || |||||
Sbjct 580629 GTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGAC 580688
Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993
|| |||| | ||||| ||||| ||||| ||||| || |||||||||||||| | ||
Sbjct 580689 AATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATC 580748
Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053
|| || || || || || |||||||| || ||||| | ||||||||| | || ||||||
Sbjct 580749 TTCGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGAG 580808
Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| ||||| ||| | || || | || || ||||||
Sbjct 580809 TCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGT 580844
>seq67
Length=938763
Score = 141 bits (156), Expect = 1e-28
Identities = 194/269 (72%), Gaps = 19/269 (7%)
Strand=Plus/Plus
Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778
||||| ||||| ||||||| || ||||| || || || ||||| |||| ||| |||
Sbjct 586790 ACTGTCCCTGCCTACTTCAACGACAACCAACGTCAAGCTACTAAGGATGCTGGTGCCATT 586849
Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838
|| ||||| ||| ||| | || ||||| || ||||| || ||||| ||||| || |||
Sbjct 586850 GCTGGTCTCAACGTTCTCCGCATCATCAACGAGCCAACTGCTGCTGCTATTGCCTACGGT 586909
Query 195839 CT-------GGACAAG---AACAAGGA-CGAAGATAAAAATGTATTGATCTTTGATCTCG 195887
|| ||| ||| |||||||| |||| |||| ||||||| ||||| |
Sbjct 586910 CTCGGTGCCGGA-AAGTCCAACAAGGAGCGAA-------ATGTCTTGATCTACGATCTTG 586961
Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947
| || || || ||||||||||| ||||| || || | |||||| | ||| || ||||
Sbjct 586962 GAGGAGGAACTTTTGATGTCTCTCTTCTTAACATCCAGGGTGGTGTTTTCACTGTCAAGG 587021
Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGT 195976
| || ||||| ||||| ||||| || |||
Sbjct 587022 CCACCGCTGGAGATACGCATCTCGGCGGT 587050
Score = 132 bits (146), Expect = 6e-26
Identities = 266/387 (69%), Gaps = 18/387 (5%)
Strand=Plus/Plus
Query 196039 AGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAA 196098
|||||| ||||| | || | ||||| | || || | || ||||| || ||||||||
Sbjct 587325 AGATATGTCTGGTGACCCCCGTGCTCTGAGACGTCTCCGCACCGCATGCGAGCGTGCCAA 587384
Query 196099 ACGAACTCTCTCTTCTACGG--CTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGA 196156
|||| |||||| |||| ||||||| | || || || || || | || |||||
Sbjct 587385 GAGAACCCTCTCTA--ACGGTGCTCAAACCACTGTCGAAATCGACTCCCTCTTCGACGGT 587442
Query 196157 ATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTT 196216
|||||| || | || |||||||| ||||| || || | ||||| | ||
Sbjct 587443 GAGGACTTCAATGCCCAGATCACCCGTGCCCGTTTCGAGGATCTTAACTCCAAGGCCTTC 587502
Query 196217 A--GGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTA 196274
| || | | || || || |||| || || ||| || || || || |||||| |
Sbjct 587503 AATGGCACTTTA--GAGCCAGTTGCCCAGGTCCTTAAGGATGCCAACATCGATAAGAGCA 587560
Query 196275 AGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGC 196334
||||||| || || |||||||| || ||||| || ||||| || ||||| || || ||
Sbjct 587561 AGGTTGACGAGATCGTCCTTGTCGGTGGATCTACACGTATCCCAAAGATCCA---GAAGC 587617
Query 196335 TTTCTAGC---TTCTTCAAT--AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389
| | ||| |||||| || || ||| || | | | | |||||||| ||||| ||
Sbjct 587618 TCTTGAGCGACTTCTTCGATGGAAAGAAGCTTGAGA--AGAGCATCAACCCCGATGAGGC 587675
Query 196390 AGTTGCTTATGGTGCGGCCGTTCAGGC 196416
|||||||||||||| ||||| |||||
Sbjct 587676 TGTTGCTTATGGTGCTGCCGTGCAGGC 587702
>seq58
Length=1028984
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929
||| || ||||| || || ||||| || || ||||||||||| ||||| || || || ||
Sbjct 907321 CTTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGAT 907380
Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989
|| || |||| ||||||| || || ||||| || || || ||||| |||||||| |
Sbjct 907381 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 907440
Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049
|| || ||||| || ||||| || ||||| || || || | || |||||| |||||||
Sbjct 907441 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 907500
Query 172050 GG 172051
||
Sbjct 907501 GG 907502
>seq52
Length=538554
Score = 125 bits (138), Expect = 9e-24
Identities = 228/330 (69%), Gaps = 14/330 (4%)
Strand=Plus/Minus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
|||||||||||||| || || ||| | | || | | || | || ||||| ||
Sbjct 345682 AAGATGAAGGAGACCGCCGAGGCTTACCTCACAAAGCCAATTCAAAACGCCGTTGTTACC 345623
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || || ||||||| ||||| ||||| ||||| || ||||| |||| | |||||
Sbjct 345622 GTCCCAGCATACTTCAACGATTCGCAACGTCAGGCTACTAAGGATGCTGGTCAAATTGCA 345563
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
||||| ||| ||| | | |||| || ||||| || || || |||||||||| ||
Sbjct 345562 GGTCTTAACGTTCTCCGTGTAGTCAACGAGCCAACCGCTGCCGCTCTTGCTTATGGGTTG 345503
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTG--ATCTTTGATCTCGGTGGTGGTACGT 195899
| | ||||| ||||| || | ||||| ||| |||||| ||||| || || |
Sbjct 345502 G------AGAAGGATGAAGACAAGA--TTATTGCTGTCTATGATCTTGGTGGAGGAACCT 345451
Query 195900 TTGATGTCTCACTTCTCAATAT--TGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957
||||| |||| |||| | || |||| ||| ||||||| || ||| | || ||
Sbjct 345450 TTGATATCTCCGTTCTTGAGATCCAGAAG--GGTGTATTCGAGGTCAAGTCCACCAACGG 345393
Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGA 195987
||| ||||| | ||||| || ||||| ||
Sbjct 345392 TGACACTCACTTGGGTGGAGAGGATTTTGA 345363
>seq105
Length=2038561
Score = 105 bits (116), Expect = 9e-18
Identities = 221/327 (68%), Gaps = 3/327 (1%)
Strand=Plus/Minus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||| || ||||| | | | || | | || | | || ||||| ||
Sbjct 1646650 AAGATGAAGGATGTCGCCGAATCATACCTCGGACACAAGGTTACCCACGCCGTTGTTACC 1646591
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || || ||||||| || || |||| || || |||||||| | || ||| ||
Sbjct 1646590 GTCCCCGCATACTTCAACGACAACCAGAGACAAGCTACCAAGGACGCCGGTGTTATCGCC 1646531
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
||| | ||| ||| | ||| |||| ||||| || || || || || || || || ||
Sbjct 1646530 GGTTTGAACGTCCTTCGTATTGTCAACGAACCTACCGCCGCAGCTATCGCATACGGACTT 1646471
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901
||||||| | ||| || | ||| |||| ||| ||||||||||| || || ||
Sbjct 1646470 GACAAGACCGAGGGAGAGCGTCAAA--TCATTG-TCTACGATCTCGGTGGCGGAACCTTC 1646414
Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961
||||| || || | ||||| ||||| | ||||| || | || ||||||||
Sbjct 1646413 GATGTTTCCCTCTTGTCCATTGATCGTGGTGTTTTCGAGGTTCTCTCAACCGCTGGTGAC 1646354
Query 195962 ACTCATCTAGGTGGTGAAGATTTCGAT 195988
|| || | || || ||||||||||||
Sbjct 1646353 ACCCACTTGGGAGGAGAAGATTTCGAT 1646327
>seq72
Length=838791
Score = 102 bits (112), Expect = 1e-16
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 172602 TCTATATGGACGTGTAGCCCCACGTTCCGGTCTAGCTGTGAAGCACTGTATCAATGTCGG 172661
|||| |||| ||| |||| ||||| || ||||| ||| ||||| ||| | ||
Sbjct 248155 TCTAGATGGTCGTATAGCGCCACGCTCGGGTCTTGCTTCTAAGCATATGATCGACACGGG 248214
Query 172662 TGCAGGTGTTATTGATCCTGATTACACTGGTGAAGTCAAGGTCGTCCTATTCAATCATGG 172721
||||| || |||||| | ||||| |||| | || ||||| | ||||||||||| ||
Sbjct 248215 CGCAGGAGTCATTGATGCAGATTATCGTGGTCAGGTTAAGGTTCTGCTATTCAATCACGG 248274
Query 172722 TACGGAAGACTTTGAAATCAAGAAGGGTGATCGTATCGCTCAACTTATTTTGGAAAGGTG 172781
| | ||||| ||| ||||| |||| |||||||| || || || || ||||| |||
Sbjct 248275 CGAGAAGGACTTCGAAGTCAAGGAGGGAGATCGTATTGCACAGCTGATCTTGGAGAGGAT 248334
Query 172782 TGATACACC 172790
| | |||||
Sbjct 248335 TTACACACC 248343
>seq112
Length=507387
Score = 95.1 bits (104), Expect = 2e-14
Identities = 207/296 (70%), Gaps = 18/296 (6%)
Strand=Plus/Plus
Query 198477 GCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTACTATGGA 198536
|| ||||| || ||| |||| | |||||||| | || | ||||| |||| | |
Sbjct 131261 GCAAAGGAGGAACTCCAGGAATTGGTTGATTTCTTGAAGAGTCCCGAGAAGTTCGCTACG 131320
Query 198537 AGTGGTGCCCGAA----TCCCACGTGGTGCTCTT-CTCGCCGGTGCCCCGGGTACTGGTA 198591
||||| ||| ||||| | |||| |||| |||| |||| | || |||||||| |
Sbjct 131321 CTTGGTG---GAAAGCTTCCCAAG-GGTG-TCTTGCTCGTCGGTCCTCCTGGTACTGGAA 131375
Query 198592 AAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTT--TCTTCAGTGCTC 198649
|||| ||||| || || ||| | || || ||| | ||||||| || |||| | || ||
Sbjct 131376 AAACGCTTCTCGCACGCGCTGTTGCTGGCGAAGCCGGTGTCCCGTTCTTCTTTA-TG-TC 131433
Query 198650 CGCGGC-GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCT 198708
| | ||||| | |||| | | |||||||||||| |||||||| ||||| ||||| |
Sbjct 131434 GGGATCTGAGTTCGA-CGAGGTTTACGTTGGTGTTGGAGCTAAGCGTGTCCGTGAACTAT 131492
Query 198709 TTG-AGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGC 198763
| | ||| || | ||| ||||| ||| ||||||| || ||| |||| ||
Sbjct 131493 TCGCAGC-TGCGAAAGGAAAACAACCTGCCATCGTCTTCATCGACGAGCTTGATGC 131547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657861051382080
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