Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq145 163 8e-35 seq56 122 3e-22 seq99 111 5e-19 seq85 109 2e-18 seq59 93.3 1e-13 seq144 84.2 6e-11 >seq145 Length=311005 Score = 163 bits (180), Expect = 8e-35 Identities = 598/927 (65%), Gaps = 17/927 (2%) Strand=Plus/Minus Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTC--GT-CGCTGTATTCTACA 155639 ||| ||| ||| |||| ||||| || || ||| ||| || | | |||||| || Sbjct 105573 AGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTC---GTCAGGTGCACAGTATTCAACT 105517 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 ||||| ||| || || || || |||||| || | |||||||| ||| || | | Sbjct 105516 ATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGG 105457 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || |||||||||||||| || ||| | ||| |||| ||||| | || || || || || Sbjct 105456 TTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATG 105397 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | |||| || || |||| ||||||| | ||| || ||| Sbjct 105396 GAGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTC 105337 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 ||| || | | || ||||||||| |||| || || ||||||| | |||| Sbjct 105336 TCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGG 105277 Query 155880 CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939 || | ||| | ||| | ||| ||||||| ||| || | ||| ||| Sbjct 105276 CACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCAT 105217 Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999 | ||| ||||| || || | || ||||| | ||||| ||||| || || || Sbjct 105216 AGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCA 105157 Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA---TTC 156056 | ||| || | ||||| || |||||| || || || || ||| |||| | Sbjct 105156 AGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGC 105097 Query 156057 CTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 | || |||||||| || ||||| | || || || ||||| || | |||||||||| | Sbjct 105096 TTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACA 105037 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 ||||| ||||| | || || || || ||| | | |||| | || | | || Sbjct 105036 ATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGG 104977 Query 156177 ATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234 | || || || ||||| || | ||| || || || || || ||| | ||||| Sbjct 104976 ACATTCAGACCGATACCTCC--AGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTAT 104919 Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCACGAACTTAATTG 156292 | |||| || || ||| || || | || | ||| ||| |||| ||| | ||| Sbjct 104918 CGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGAT-CAAGA-AGCATGAAGAGAGTTG 104861 Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGA 156352 | | ||||||| || ||| || || || || | || || |||| ||||| | || Sbjct 104860 TGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA 104801 Query 156353 CATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGAC 156412 ||| ||| ||||||||| || |||||| || | ||||||||||| || || || Sbjct 104800 CATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCAC 104741 Query 156413 CCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGC 156472 ||||| ||| || || ||||| || ||||| || || | || |||||||||| Sbjct 104740 TCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGA 104681 Query 156473 GCGTTCCAGAGTTTTAAACCCGAAATA 156499 | || ||||| || || || || || Sbjct 104680 TCTCTCAAGAGTCTTGAATCCAAAGTA 104654 >seq56 Length=522306 Score = 122 bits (134), Expect = 3e-22 Identities = 207/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||||| | ||||| | |||||| || || || ||||| || || || Sbjct 353970 CATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCTT 353911 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || | ||| | |||||| |||||||||||||||| | ||| || Sbjct 353910 AACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAGG 353851 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | || | | ||| |||||||||| ||||||| || || || | || Sbjct 353850 TGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCATC 353791 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||||| || || || | ||| | || || ||||| | || ||||||||||| || || Sbjct 353790 TTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGAC 353731 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||| || | | | ||||||| |||||||| | | ||||||||||| Sbjct 353730 AGATTGCTGACCGACCAAAGCTGTCATCTGAGAAATATTGATGGTAGAACCCTTGGAGCC 353671 >seq99 Length=1545699 Score = 111 bits (122), Expect = 5e-19 Identities = 383/590 (65%), Gaps = 18/590 (3%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | |||||||||||| || | ||||| ||| | || ||| | Sbjct 941549 ATTAGTCCACAGATGTCACACACATGGACTCTAAAGGCATCCGATACCTCGAATAATCTC 941608 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| |||| | || ||||| |||||||||||||||||||||||||| |||||| Sbjct 941609 TCCTTCAAGAAGGACGCCGCTCCGTGCGAAATCATACAATCACGCTCCATTTCTCCGAAA 941668 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| | || | ||| || ||||||| | || ||| | | ||| Sbjct 941669 CGCAGACCACCATCTCTGGCACGACCTTCTACAGGCTGTCTGGTCAGAATCTGAACGGGA 941728 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || ||| ||| ||| ||| || | |||||||| ||||| || || | | Sbjct 941729 CCTCTGGCTCGGGCATGGATCTTGTCGTCCACCATATGGCGCAGACGTTGATAATAGGTT 941788 Query 251647 GGACCGATGAAGATGCTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACT 251703 ||||| | ||||| || | || ||| || | ||||| || | | |||||| | Sbjct 941789 GGACCAAGGAAGA--CTTG-AGCCATCATCTTTCGCCCAGTGTGACCATGATACATGATC 941845 Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTC---TGTAGCTCTGAAGCAATATCACCAATC 251760 ||| ||| ||| | ||||||| | | | |||| ||| | |||| || Sbjct 941846 TCGAAGCCACGAGAATGATAACCATGAGCCCGGAGAAGCTTCGAAACGGAATCAACA--- 941902 Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCT 251820 ||| | | |||| || | || || | || || | || | || || | Sbjct 941903 GTGACCTCGGTAAAGGGCGTCGCATCACCCTCGAGTCCACGAAGCGTCGAAACCTTACTC 941962 Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 | | ||| ||| ||||| || ||||||||| |||||||| ||||| |||||| Sbjct 941963 AGTTGACACTCGATCAAATGGGCAATTGTCATACGAGATGGAATAGCGTGGGGGTTGATG 942022 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TG 251937 || | || || | || | |||||| |||||||| ||| | | ||| || Sbjct 942023 ATCAAATCCGGCACGATACCCTGGCAAGTGAATGGCATATC---TTCATGACGGTAAGTG 942079 Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || || || ||||| |||||||| ||||| || ||||||||||| Sbjct 942080 ATACCGATGGTACCCTTCTGTCCGTGGCGAGAGGCAAATTTATCACCAAT 942129 >seq85 Length=1171154 Score = 109 bits (120), Expect = 2e-18 Identities = 333/511 (65%), Gaps = 4/511 (1%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || || || ||||| | |||||||| | | ||||||||| || ||| | | Sbjct 1031531 TTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTA 1031472 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || ||| ||||||||||| ||||| | || ||||| || || ||| ||| | | Sbjct 1031471 CATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 1031412 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || |||||| || ||| | || ||||||||| | | || || || || || |||| Sbjct 1031411 TCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACG 1031352 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAAT 133676 | || || || | ||||| | || |||||||| |||||| | | ||| | | Sbjct 1031351 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACT 1031292 Query 133677 TAGAGCGACCACTCAA--AAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAAT 133734 | || | | | ||| || || || | |||| |||||| || || ||||| || Sbjct 1031291 T-GAACCATCGTCCAAGCAAGCAAGCAG-TCCAAGACGTTATTACCGAGGCTGTTGAGAT 1031234 Query 133735 TGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCT 133794 ||| || || | | | |||||| || || | | | || ||||| | || | Sbjct 1031233 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 1031174 Query 133795 GATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAA 133854 |||| ||| || ||||| || || ||||| | || | | | ||| || || Sbjct 1031173 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 1031114 Query 133855 GATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGAC 133914 | |||| |||||||| |||||||||| ||||||| ||| ||| |||||| Sbjct 1031113 GTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGAC 1031054 Query 133915 TAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 || ||||||||| | | || ||||| ||| Sbjct 1031053 CAACTTCTTCGAGAAGCGTGTCGCCGACTAC 1031023 >seq59 Length=800985 Score = 93.3 bits (102), Expect = 1e-13 Identities = 201/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 288937 TTAAATCCATCCATACTTGTTAA-AATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 |||||||| ||||| || | ||| ||| ||||| || || ||| | |||||| ||| Sbjct 82075 TTAAATCCGTCCAT-CTCGGTAAGAATCTGATTGAGAGTGGCTTCTCGTTCATCGTTTCC 82017 Query 288996 ACCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054 ||| | |||| | || | | | | ||| || | ||| || || || || |||| Sbjct 82016 ACCGCC-GAATGATCCAGCCTTCCCACGAGCTTTCCCGATAGCGTCGATCTCATCGATGA 81958 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | || | ||| || | || | ||| || || | ||||| || | || | || || | Sbjct 81957 AGATAATACAAGGCGTGTTCTTTCTTGCCATAGTGAATAAATCACGCACCCTCGAAGCAC 81898 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT-TGAATGAATGTTACATTT 289173 | | ||||||| |||| || || ||||| ||| |||| || |||| ||||| ||| | Sbjct 81897 CTACACCAACAAACATCTCCACGAATTCGGAACCGGAAACGCTGAA-GAATGGTACTTGA 81839 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| || || ||| | |||||||| || |||||||||||||| || || Sbjct 81838 GATTCACCAGCGGTAGCCTTGGCCAGAAGAGTTTTACCTGTTCCAGGAGGACC 81786 >seq144 Length=345875 Score = 84.2 bits (92), Expect = 6e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 353913 GCGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGAT 353971 |||||| || |||| |||| || |||||||| ||| ||||||| || || | Sbjct 292759 GCGACCGTCAGCAACGTGCCATTGCTCAGGGCAGAGCGCACCGACGAATTCCTCGTTG-T 292817 Query 353972 GAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031 |||| || || || ||||| || ||| ||| || || ||| | ||||| | Sbjct 292818 GAGAAATCATGATAACACCTCCCTTGTAGTCACGAATAGCGACAGCAAGACCTCCAAGAG 292877 Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091 | ||||| || | |||||| ||||||||||| |||| |||| || || | |||||| Sbjct 292878 AATCACGATCTAAGAAATTGGTAGGTTCGTCGAGGACGAGAAGATGGGGGTTGTTCCACA 292937 Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | || | || || || ||||| || |||||||| || || || Sbjct 292938 TAGCACCTGCGAGGACAACCTTGACTTTCTGTCCACCGGAAAG 292980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814507343268