Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq145 163 8e-35
seq56 122 3e-22
seq99 111 5e-19
seq85 109 2e-18
seq59 93.3 1e-13
seq144 84.2 6e-11
>seq145
Length=311005
Score = 163 bits (180), Expect = 8e-35
Identities = 598/927 (65%), Gaps = 17/927 (2%)
Strand=Plus/Minus
Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTC--GT-CGCTGTATTCTACA 155639
||| ||| ||| |||| ||||| || || ||| ||| || | | |||||| ||
Sbjct 105573 AGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTC---GTCAGGTGCACAGTATTCAACT 105517
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
||||| ||| || || || || |||||| || | |||||||| ||| || | |
Sbjct 105516 ATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGG 105457
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| |||||||||||||| || ||| | ||| |||| ||||| | || || || || ||
Sbjct 105456 TTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATG 105397
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819
||| || | |||| || || |||| ||||||| | ||| || |||
Sbjct 105396 GAGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTC 105337
Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879
||| || | | || ||||||||| |||| || || ||||||| | ||||
Sbjct 105336 TCATAGAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGG 105277
Query 155880 CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939
|| | ||| | ||| | ||| ||||||| ||| || | ||| |||
Sbjct 105276 CACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCAT 105217
Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999
| ||| ||||| || || | || ||||| | ||||| ||||| || || ||
Sbjct 105216 AGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCA 105157
Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA---TTC 156056
| ||| || | ||||| || |||||| || || || || ||| |||| |
Sbjct 105156 AGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGC 105097
Query 156057 CTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116
| || |||||||| || ||||| | || || || ||||| || | |||||||||| |
Sbjct 105096 TTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACA 105037
Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176
||||| ||||| | || || || || ||| | | |||| | || | | ||
Sbjct 105036 ATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGG 104977
Query 156177 ATATGTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCATTCCTTTACAGTAT 156234
| || || || ||||| || | ||| || || || || || ||| | |||||
Sbjct 104976 ACATTCAGACCGATACCTCC--AGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTAT 104919
Query 156235 TGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCACGAACTTAATTG 156292
| |||| || || ||| || || | || | ||| ||| |||| ||| | |||
Sbjct 104918 CGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGAT-CAAGA-AGCATGAAGAGAGTTG 104861
Query 156293 AGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGA 156352
| | ||||||| || ||| || || || || | || || |||| ||||| | ||
Sbjct 104860 TGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGTACTTGCTGGA 104801
Query 156353 CATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGAC 156412
||| ||| ||||||||| || |||||| || | ||||||||||| || || ||
Sbjct 104800 CATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCAC 104741
Query 156413 CCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGC 156472
||||| ||| || || ||||| || ||||| || || | || ||||||||||
Sbjct 104740 TCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGGAGAAGGTATGA 104681
Query 156473 GCGTTCCAGAGTTTTAAACCCGAAATA 156499
| || ||||| || || || || ||
Sbjct 104680 TCTCTCAAGAGTCTTGAATCCAAAGTA 104654
>seq56
Length=522306
Score = 122 bits (134), Expect = 3e-22
Identities = 207/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||||| | ||||| | |||||| || || || ||||| || || ||
Sbjct 353970 CATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCTT 353911
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||| ||||| || | ||| | |||||| |||||||||||||||| | ||| ||
Sbjct 353910 AACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAGG 353851
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
| || || | || | | ||| |||||||||| ||||||| || || || | ||
Sbjct 353850 TGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCATC 353791
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||||| || || || | ||| | || || ||||| | || ||||||||||| || ||
Sbjct 353790 TTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGAC 353731
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
||||| || | | | ||||||| |||||||| | | |||||||||||
Sbjct 353730 AGATTGCTGACCGACCAAAGCTGTCATCTGAGAAATATTGATGGTAGAACCCTTGGAGCC 353671
>seq99
Length=1545699
Score = 111 bits (122), Expect = 5e-19
Identities = 383/590 (65%), Gaps = 18/590 (3%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| | | |||||||||||| || | ||||| ||| | || ||| |
Sbjct 941549 ATTAGTCCACAGATGTCACACACATGGACTCTAAAGGCATCCGATACCTCGAATAATCTC 941608
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| |||| | || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 941609 TCCTTCAAGAAGGACGCCGCTCCGTGCGAAATCATACAATCACGCTCCATTTCTCCGAAA 941668
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| | || | ||| || ||||||| | || ||| | | |||
Sbjct 941669 CGCAGACCACCATCTCTGGCACGACCTTCTACAGGCTGTCTGGTCAGAATCTGAACGGGA 941728
Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646
|| ||| ||| ||| ||| || | |||||||| ||||| || || | |
Sbjct 941729 CCTCTGGCTCGGGCATGGATCTTGTCGTCCACCATATGGCGCAGACGTTGATAATAGGTT 941788
Query 251647 GGACCGATGAAGATGCTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACT 251703
||||| | ||||| || | || ||| || | ||||| || | | |||||| |
Sbjct 941789 GGACCAAGGAAGA--CTTG-AGCCATCATCTTTCGCCCAGTGTGACCATGATACATGATC 941845
Query 251704 TCGTTTCCATTAGATTCATAACCAAGTTTC---TGTAGCTCTGAAGCAATATCACCAATC 251760
||| ||| ||| | ||||||| | | | |||| ||| | |||| ||
Sbjct 941846 TCGAAGCCACGAGAATGATAACCATGAGCCCGGAGAAGCTTCGAAACGGAATCAACA--- 941902
Query 251761 TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCT 251820
||| | | |||| || | || || | || || | || | || || |
Sbjct 941903 GTGACCTCGGTAAAGGGCGTCGCATCACCCTCGAGTCCACGAAGCGTCGAAACCTTACTC 941962
Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880
| | ||| ||| ||||| || ||||||||| |||||||| ||||| ||||||
Sbjct 941963 AGTTGACACTCGATCAAATGGGCAATTGTCATACGAGATGGAATAGCGTGGGGGTTGATG 942022
Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TG 251937
|| | || || | || | |||||| |||||||| ||| | | ||| ||
Sbjct 942023 ATCAAATCCGGCACGATACCCTGGCAAGTGAATGGCATATC---TTCATGACGGTAAGTG 942079
Query 251938 TTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| || || || ||||| |||||||| ||||| || |||||||||||
Sbjct 942080 ATACCGATGGTACCCTTCTGTCCGTGGCGAGAGGCAAATTTATCACCAAT 942129
>seq85
Length=1171154
Score = 109 bits (120), Expect = 2e-18
Identities = 333/511 (65%), Gaps = 4/511 (1%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||| || || || ||||| | |||||||| | | ||||||||| || ||| | |
Sbjct 1031531 TTCCCTGCATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCTA 1031472
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|| ||| ||||||||||| ||||| | || ||||| || || ||| ||| | |
Sbjct 1031471 CATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCAT 1031412
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| |||||| || ||| | || ||||||||| | | || || || || || ||||
Sbjct 1031411 TCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACG 1031352
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAAT 133676
| || || || | ||||| | || |||||||| |||||| | | ||| | |
Sbjct 1031351 AGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTTCTCCCACT 1031292
Query 133677 TAGAGCGACCACTCAA--AAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAAT 133734
| || | | | ||| || || || | |||| |||||| || || ||||| ||
Sbjct 1031291 T-GAACCATCGTCCAAGCAAGCAAGCAG-TCCAAGACGTTATTACCGAGGCTGTTGAGAT 1031234
Query 133735 TGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCT 133794
||| || || | | | |||||| || || | | | || ||||| | || |
Sbjct 1031233 CGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTT 1031174
Query 133795 GATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGATAA 133854
|||| ||| || ||||| || || ||||| | || | | | ||| || ||
Sbjct 1031173 GATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAA 1031114
Query 133855 GATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGAC 133914
| |||| |||||||| |||||||||| ||||||| ||| ||| ||||||
Sbjct 1031113 GTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGGAAAGAC 1031054
Query 133915 TAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945
|| ||||||||| | | || ||||| |||
Sbjct 1031053 CAACTTCTTCGAGAAGCGTGTCGCCGACTAC 1031023
>seq59
Length=800985
Score = 93.3 bits (102), Expect = 1e-13
Identities = 201/293 (69%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 288937 TTAAATCCATCCATACTTGTTAA-AATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995
|||||||| ||||| || | ||| ||| ||||| || || ||| | |||||| |||
Sbjct 82075 TTAAATCCGTCCAT-CTCGGTAAGAATCTGATTGAGAGTGGCTTCTCGTTCATCGTTTCC 82017
Query 288996 ACCTCTTGAATCACCC-GAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGA 289054
||| | |||| | || | | | | ||| || | ||| || || || || ||||
Sbjct 82016 ACCGCC-GAATGATCCAGCCTTCCCACGAGCTTTCCCGATAGCGTCGATCTCATCGATGA 81958
Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114
| || | ||| || | || | ||| || || | ||||| || | || | || || |
Sbjct 81957 AGATAATACAAGGCGTGTTCTTTCTTGCCATAGTGAATAAATCACGCACCCTCGAAGCAC 81898
Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT-TGAATGAATGTTACATTT 289173
| | ||||||| |||| || || ||||| ||| |||| || |||| ||||| ||| |
Sbjct 81897 CTACACCAACAAACATCTCCACGAATTCGGAACCGGAAACGCTGAA-GAATGGTACTTGA 81839
Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226
| ||| || || ||| | |||||||| || |||||||||||||| || ||
Sbjct 81838 GATTCACCAGCGGTAGCCTTGGCCAGAAGAGTTTTACCTGTTCCAGGAGGACC 81786
>seq144
Length=345875
Score = 84.2 bits (92), Expect = 6e-11
Identities = 154/223 (69%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 353913 GCGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCC-CGCTGAT 353971
|||||| || |||| |||| || |||||||| ||| ||||||| || || |
Sbjct 292759 GCGACCGTCAGCAACGTGCCATTGCTCAGGGCAGAGCGCACCGACGAATTCCTCGTTG-T 292817
Query 353972 GAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCG 354031
|||| || || || ||||| || ||| ||| || || ||| | ||||| |
Sbjct 292818 GAGAAATCATGATAACACCTCCCTTGTAGTCACGAATAGCGACAGCAAGACCTCCAAGAG 292877
Query 354032 AGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACA 354091
| ||||| || | |||||| ||||||||||| |||| |||| || || | ||||||
Sbjct 292878 AATCACGATCTAAGAAATTGGTAGGTTCGTCGAGGACGAGAAGATGGGGGTTGTTCCACA 292937
Query 354092 TTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
| || | || || || ||||| || |||||||| || || ||
Sbjct 292938 TAGCACCTGCGAGGACAACCTTGACTTTCTGTCCACCGGAAAG 292980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471814507343268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |