Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq59 123 3e-22
seq85 105 8e-17
>seq59
Length=800985
Score = 123 bits (136), Expect = 3e-22
Identities = 89/103 (86%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| ||||||||||| || || || |||| |||||| |||| || |||||||
Sbjct 19634 CCAACTACCTGGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACTGTCGCGAACATGA 19575
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 19574 TCAAGGGCAAGTCACCAGAGGAGATCCGAAAGACCTTCAACAT 19532
>seq85
Length=1171154
Score = 105 bits (116), Expect = 8e-17
Identities = 159/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758
||| ||| | || ||| |||||| ||||||||||| || | || ||||| ||||||
Sbjct 1031023 GTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCAT 1031082
Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818
| ||| ||||||| | |||||| | ||| ||| ||||| | |||||| ||
Sbjct 1031083 GAAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAGGAGCAGACG 1031142
Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878
|| ||||| ||||| ||||| || ||| | | ||||||||||||| || ||
Sbjct 1031143 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 1031202
Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924
|| || | || ||| ||||||| ||||||||| || ||||||
Sbjct 1031203 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCG 1031248
Score = 89.7 bits (98), Expect = 6e-12
Identities = 138/194 (71%), Gaps = 5/194 (3%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||||||||| || ||| | |||||| |||| || || ||||| || || |||||
Sbjct 1031329 ACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGACCACGCTT 1031388
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||| | ||| || || | | ||| || ||||| ||||| ||||| || ||||||||
Sbjct 1031389 CTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAGCGGCAAA 1031448
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC-CTTGTTGATCCACTTCATCGCCC 869357
| | | ||| |||| || || ||| ||| || | |||| |||||| | | ||||
Sbjct 1031449 GGCAACGAGACGCTGAGCGAA--TGTAGAGTCCTTATCTTG--GATCCATCTTACGGCCC 1031504
Query 869358 AGTCGGCCTTTTTC 869371
|||||||||| |||
Sbjct 1031505 AGTCGGCCTTCTTC 1031518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107125741391988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |