Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq85 109 4e-19 seq58 95.1 8e-15 seq95 93.3 3e-14 >seq85 Length=1171154 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 10/205 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| || || || ||| |||| |||| Sbjct 580828 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 580769 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||||||||||| |||||||| || | || | ||||||||||| Sbjct 580768 TCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTGTCT 580709 Query 34886 TTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| |||| ||||| | || ||||| || | || | Sbjct 580708 TGGATCTTCGACTTGACATTGTCGATGGTATCGGATGAT-----TCGACTTCGAGAGTGA 580654 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTAC 34965 ||||||| || || || ||||| || Sbjct 580653 TGGTCTTGCCAGTAAGAGTCTTGAC 580629 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| || ||||||||| |||||||| || || | | | || |||| Sbjct 581056 AGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCC 580997 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||| ||||| || |||| |||||||| | || | ||||||||||| Sbjct 580996 TCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCC 580937 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | ||| | ||||| || | || || ||| Sbjct 580936 TGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTC 580877 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || |||||||| Sbjct 580876 TTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 580845 >seq58 Length=1028984 Score = 95.1 bits (104), Expect = 8e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| |||||||| ||||| || || | || |||| || || |||||||| ||||||| Sbjct 907502 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 907443 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||||||||| | || | ||||||||||| | || || ||||| Sbjct 907442 TCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 907383 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || ||| || || | ||| || |||||||| ||||| || || || | Sbjct 907382 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 907323 Query 34968 AG 34969 || Sbjct 907322 AG 907321 >seq95 Length=967449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || ||||||||| ||||| ||||| || ||| | || |||| Sbjct 168589 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 168648 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| ||||||||||| || ||||| ||||| | || | ||||||||||| Sbjct 168649 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTC 168707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692149021516