Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq159 120 2e-21
seq56 96.9 3e-14
seq67 87.8 1e-11
>seq159
Length=1199673
Score = 120 bits (132), Expect = 2e-21
Identities = 414/638 (65%), Gaps = 6/638 (1%)
Strand=Plus/Plus
Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241
||||||||||| || || || ||||| ||||| | ||| | || | |||| | ||
Sbjct 167139 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 167198
Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301
| || | || || || | || |||||||| ||||| ||||| ||||| | |||
Sbjct 167199 TCAAAGATACCCTCCTCGATAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 167258
Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361
|| || || ||||| || || ||||| |||||||| || |||| |||||
Sbjct 167259 AAGATGAGGACATTACGCTCACCCTCAACCTTTTTGTCAAGACCGTAGGCAATGGCAGCG 167318
Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421
|||||||| || || || |||| | |||||| ||||| || || || ||||| ||
Sbjct 167319 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 167378
Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480
|||||||| | || || || | || || || || ||||||| ||||| | |||| ||
Sbjct 167379 GTGGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGT-TGTTGAC 167437
Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540
| ||| | ||||| || || | | |||| || || ||||| || || ||
Sbjct 167438 AGTTCCTCCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGAT 167497
Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599
| || || | ||||||| || |||| | | || || | ||| ||
Sbjct 167498 CTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTTC 167556
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCA 282658
|||| | | ||| | || || | | |||||||| | || || || | ||
Sbjct 167557 CACCACGGTCGAGAACAGTGAAGGGGAAGTGCTTCATATCAGCCTGGAC-CTCAGCATCT 167615
Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718
| | | ||||| | || || ||||| || | ||| ||| |||| || | |||
Sbjct 167616 GCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCA 167675
Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778
|||| | ||||| |||||||| |||| | | || || ||||| || | || | ||
Sbjct 167676 ACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTGAAGGCGACGAAGGAA 167735
Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816
|| |||||||| || || || || || || || |||||
Sbjct 167736 GGTGTTGTGCGGTTTCCCTGGTCGTTTGCGATGATTTC 167773
>seq56
Length=522306
Score = 96.9 bits (106), Expect = 3e-14
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
||||| ||||||||| || | || ||||||||||| |||||||||||| | || ||||||
Sbjct 352414 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 352473
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| || |||||| ||| || ||| | |||| |||| ||||| || || | ||||
Sbjct 352474 ACCGTCATTACTGGTGACCCGAATTTGTCTCTGGATGAGGTTGGAGTACCCAGAAGTATT 352533
Query 432408 GCG 432410
|||
Sbjct 352534 GCG 352536
Score = 87.8 bits (96), Expect = 1e-11
Identities = 115/156 (74%), Gaps = 5/156 (3%)
Strand=Plus/Plus
Query 435113 TCGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTA 435172
|||||| ||| |||| || || |||||||| | ||||||||||| |||||| | |
Sbjct 353838 TCGAGG-TCTCACACCTACCGAGTTCTTCTTCCATGCTATGGCTGGTCGAGAAGGTTTGA 353896
Query 435173 TTAATACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGC 435232
| |||| ||| |||| |||||||| ||||| || || ||| | ||||||||| |
Sbjct 353897 TCGATACTGCTGTTAAGACTGCTGAGACTGGATACATCCAACGTCGTCTTGTCAAGGCTC 353956
Query 435233 TTGAAGATATTA--AACAAGAATATGATGGTACAGT 435266
| |||||| ||| |||| || |||||||||||
Sbjct 353957 TGGAAGATGTTATGGCCAAG--TACGATGGTACAGT 353990
>seq67
Length=938763
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400
||||| || |||| ||||||||||||||| || || || || | | ||| || ||||||
Sbjct 586911 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 586852
Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460
||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| |||
Sbjct 586851 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 586792
Query 282461 GTAATAACGGC 282471
|| || || ||
Sbjct 586791 GTGATGACAGC 586781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740622348293064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |