Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq159 120 2e-21 seq56 96.9 3e-14 seq67 87.8 1e-11 >seq159 Length=1199673 Score = 120 bits (132), Expect = 2e-21 Identities = 414/638 (65%), Gaps = 6/638 (1%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||||||||| || || || ||||| ||||| | ||| | || | |||| | || Sbjct 167139 ACAAGACGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACC 167198 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || || || | || |||||||| ||||| ||||| ||||| | ||| Sbjct 167199 TCAAAGATACCCTCCTCGATAGTCAAAAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 167258 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 || || || ||||| || || ||||| |||||||| || |||| ||||| Sbjct 167259 AAGATGAGGACATTACGCTCACCCTCAACCTTTTTGTCAAGACCGTAGGCAATGGCAGCG 167318 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 |||||||| || || || |||| | |||||| ||||| || || || ||||| || Sbjct 167319 GCAGTTGGCTCGTTGATGATTCGGAGAACATTGAGACCGGCGATCAGACCGGCATCCTTT 167378 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-AC 282480 |||||||| | || || || | || || || || ||||||| ||||| | |||| || Sbjct 167379 GTGGCTTGACGCTGGGAGTCAGTGAAGTAAGCTGGTACAGTAACGACGGCGT-TGTTGAC 167437 Query 282481 TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 | ||| | ||||| || || | | |||| || || ||||| || || || Sbjct 167438 AGTTCCTCCGAGGTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGAT 167497 Query 282541 TTGTTCTGGAGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTAT 282599 | || || | ||||||| || |||| | | || || | ||| || Sbjct 167498 CTCCTCAGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCA-ACCTCGACGACTGGCTTTC 167556 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTG-GTCA 282658 |||| | | ||| | || || | | |||||||| | || || || | || Sbjct 167557 CACCACGGTCGAGAACAGTGAAGGGGAAGTGCTTCATATCAGCCTGGAC-CTCAGCATCT 167615 Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718 | | | ||||| | || || ||||| || | ||| ||| |||| || | ||| Sbjct 167616 GCGTACTTGCGTCCAATCAGACGCTTGGCATCGAAGACAGTGTTGATTGGGTTCATGGCA 167675 Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778 |||| | ||||| |||||||| |||| | | || || ||||| || | || | || Sbjct 167676 ACTTGGTTCTTGGCAGCATCTCCGATCAAACGCTCAGTATCTGTGAAGGCGACGAAGGAA 167735 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816 || |||||||| || || || || || || || ||||| Sbjct 167736 GGTGTTGTGCGGTTTCCCTGGTCGTTTGCGATGATTTC 167773 >seq56 Length=522306 Score = 96.9 bits (106), Expect = 3e-14 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||| ||||||||| || | || ||||||||||| |||||||||||| | || |||||| Sbjct 352414 GGTAAGGAAGGTCGTCTTCGTGGTAATTTGATGGGTAAGCGTGTCGATTTCTCGGCACGT 352473 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407 || || |||||| ||| || ||| | |||| |||| ||||| || || | |||| Sbjct 352474 ACCGTCATTACTGGTGACCCGAATTTGTCTCTGGATGAGGTTGGAGTACCCAGAAGTATT 352533 Query 432408 GCG 432410 ||| Sbjct 352534 GCG 352536 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 435113 TCGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTA 435172 |||||| ||| |||| || || |||||||| | ||||||||||| |||||| | | Sbjct 353838 TCGAGG-TCTCACACCTACCGAGTTCTTCTTCCATGCTATGGCTGGTCGAGAAGGTTTGA 353896 Query 435173 TTAATACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGC 435232 | |||| ||| |||| |||||||| ||||| || || ||| | ||||||||| | Sbjct 353897 TCGATACTGCTGTTAAGACTGCTGAGACTGGATACATCCAACGTCGTCTTGTCAAGGCTC 353956 Query 435233 TTGAAGATATTA--AACAAGAATATGATGGTACAGT 435266 | |||||| ||| |||| || ||||||||||| Sbjct 353957 TGGAAGATGTTATGGCCAAG--TACGATGGTACAGT 353990 >seq67 Length=938763 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 ||||| || |||| ||||||||||||||| || || || || | | ||| || |||||| Sbjct 586911 AGACCGTAGGCAATAGCAGCAGCAGTTGGCTCGTTGATGATGCGGAGAACGTTGAGACCA 586852 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 ||||| || ||||| ||||| ||||| | ||| ||||| || || ||||| ||| Sbjct 586851 GCAATGGCACCAGCATCCTTAGTAGCTTGACGTTGGTTGTCGTTGAAGTAGGCAGGGACA 586792 Query 282461 GTAATAACGGC 282471 || || || || Sbjct 586791 GTGATGACAGC 586781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740622348293064