Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq85 127 4e-24 >seq85 Length=1171154 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | || |||||||| || ||||| || ||||||||||| | | | || Sbjct 581059 CGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCA 581000 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| |||||||| || || ||||| || || || || || || || ||||| Sbjct 580999 TCCTCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTG 580940 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||||| || || || ||||| |||||| | ||| || || | || || Sbjct 580939 TCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATT 580880 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| ||||| || || |||||||| Sbjct 580879 GTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 580845 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || ||||||||||| ||||| || || ||||| | Sbjct 580553 TACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCG 580494 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||| || || || || ||||| ||||| | | || || || || | Sbjct 580493 AGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGG 580434 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || ||||| ||||| ||| ||||| || ||||| || || || || || || Sbjct 580433 GAATGCCCTCCTTGTCTTGGATC-TTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCG 580375 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || | ||| || |||||||| || Sbjct 580374 ACCTCGAGAGTGATGGTCTTGCCGGT 580349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825136935596