Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq85 116 4e-21
seq58 105 6e-18
>seq85
Length=1171154
Score = 116 bits (128), Expect = 4e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || || ||||| || || | | | ||||| || ||||| ||
Sbjct 581041 GTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCA-TCCTCAAGTTGCTTTCC 580983
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| ||||||| | |||||||||||| ||||| || |||||||| ||||||| |||
Sbjct 580982 AGCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTT 580923
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| || || | | || || |||| |||| || || |||||||||||
Sbjct 580922 GACGTTATCAATAGTATCAGATGATTCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGT 580863
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 580862 CTTGACGAAAATCTGCAT 580845
Score = 102 bits (112), Expect = 8e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| ||||| || ||||||||| || ||| | | | || ||||| ||||| ||
Sbjct 580813 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCA-TCTTCGAGTTGCTTTCC 580755
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | || ||||| |||||||||||||| |||||||| |||||| |||
Sbjct 580754 GGCGAAGATCAAACGTTGCTGATCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTT 580695
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | || |||| | || || |||| |||| ||| ||||| || |||||
Sbjct 580694 GACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTGCCAGTAAGAGT 580635
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 580634 CTTGACGA 580627
Score = 100 bits (110), Expect = 3e-16
Identities = 128/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| || |||||||| | ||| ||| ||||||||||||||||||
Sbjct 580521 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACC-GTCCTCGAGCTGCTTGCC 580463
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | |||||||||||||| || ||||| |||||||| |||||| |||
Sbjct 580462 AGCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTT 580403
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
|| | || | ||||| | | ||| || |||| |||| ||| ||||||||
Sbjct 580402 GACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 580349
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| |||| || ||| | | | ||||| | |||||| ||
Sbjct 581269 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCA-TCCTCCAACTGCTTACC 581211
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| || | |||||||||||| ||||| || ||||| || |||||| |||
Sbjct 581210 AGCAAAAATTAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATCTTGGACTT 581151
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | ||| || || | || | || || || |||| |||
Sbjct 581150 GACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGT 581091
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 581090 CTTGACGAAGATCTGCAT 581073
>seq58
Length=1028984
Score = 105 bits (116), Expect = 6e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| || ||| | || | || ||||||||||| ||||| || ||||||
Sbjct 907467 TCCTCGAGCTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTG 907408
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | |||| ||| |||| || ||| || |||| ||| |
Sbjct 907407 TCCTGGATCTTGGACTTGACATTGTCAATCGTATCGGAGGACTCTACCTCGAGGGTAATT 907348
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651
|| || ||||| |||||||| |||||
Sbjct 907347 GTCTTTCCGGTGAGAGTTTTGACGAA 907322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483419808987360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |