Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq85 114 3e-20
>seq85
Length=1171154
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || | || ||||| || || ||| ||||||| || ||||||
Sbjct 581076 CAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCTGAC 581135
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| |||| || ||| ||||| || || || || || || || ||| ||
Sbjct 581136 ACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAG 581195
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||||| || || || || ||||||||||| ||||| | |||||| ||| |||||| ||
Sbjct 581196 AGACTAATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAACATC 581255
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| ||||||||||| || || || ||| | |||||
Sbjct 581256 CAGAAGGAGTCTACTCTCCATCTGGTGTTGCGTCTTCG 581293
Score = 96.9 bits (106), Expect = 8e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || || || ||||| || ||||| | || || ||| |||||
Sbjct 580848 CAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCTGAT 580907
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| |||||| || || || || || || || ||| ||
Sbjct 580908 ACTATTGATAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAG 580967
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||||| || ||||| |||||||| | || ||||| | || ||| | ||||| ||| ||
Sbjct 580968 AGACTCATTTTCGCTGGAAAGCAACTTGAGGATGGCCGTACCTTGTCTGATTATAACATC 581027
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| |||||||||||||| || ||| | | |||||
Sbjct 581028 CAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCG 581065
Score = 91.5 bits (100), Expect = 3e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
||| || || || || || || |||||| | ||||| ||| || || || ||||
Sbjct 580631 CAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCGACAA 580690
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| ||||| ||||| || || || || || || ||| | | |||||
Sbjct 580691 TGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGATCAGCAACGTTTGATCTT 580750
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||||||||| | |||||||| | || || ||||||||||| ||||||| |||||
Sbjct 580751 CGCCGGAAAGCAACTCGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGAGTC 580810
Query 206364 TACTCTTCAC 206373
||||| |||
Sbjct 580811 CACTCTCCAC 580820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181818316699044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |