Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq145 262 5e-65 seq85 87.8 2e-12 >seq145 Length=311005 Score = 262 bits (290), Expect = 5e-65 Identities = 1139/1777 (64%), Gaps = 37/1777 (2%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || || |||||||| | ||| || | | ||||| || |||||||| ||||| |||||| Sbjct 106476 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 106417 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || ||| |||||||| || | ||| | ||||||| || Sbjct 106416 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 106357 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || || ||||||||||| || |||||||| || || | ||| || ||||| | | Sbjct 106356 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 106297 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | || | || ||||| | |||||| ||| |||||||| | |||| Sbjct 106296 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATA 106237 Query 68614 CTCGT---ATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | |||||| ||||| || ||||||| || || ||||| || | ||| | Sbjct 106236 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 106177 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || | | || | | | | | | || ||||| | ||| ||||| ||| Sbjct 106176 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 106117 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | || | ||| || || || ||||| || | | | || || || Sbjct 106116 GCCAAGACACGTCGGGAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 106057 Query 68791 AGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCA 68850 || |||||| || |||||||||||||| || || | ||||| || | |||||| Sbjct 106056 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 105997 Query 68851 TG-TGTTATGATTTTAT-CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 || || | |||||| | ||| || || ||| ||||||||||| | ||| ||| | Sbjct 105996 TGCTGCT-TGATTTGTTGCTTCAAGGTGGC-CCAGTCCCAAAGATCGGTAGGTGTAACCT 105939 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 |||| | ||||||||| || ||| | || || || | ||||| || |||| Sbjct 105938 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAG 105879 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGA 69028 || | ||| | || || ||| | || || ||| ||| || || || |||| Sbjct 105878 TACCATGCTGCTTTGCAAGCTCAACAGATGAAGTCAAGGCAGCGTGGTAGATGGTCTCGA 105819 Query 69029 AAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA-ATA 69087 | |||| ||||||||| || || || | |||||||| | | || || | Sbjct 105818 AGATCTGGATATTGAGATGTTTGGCCTCGGGTGACTCGAATGGG-AGTCGAAGAGCTAGG 105760 Query 69088 AATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT 69147 || |||| || | ||||| || |||| | | |||||||| || | ||| | ||| Sbjct 105759 AAGACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTT 105701 Query 69148 TCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-AAGAT-TTCGGACT 69204 | || || |||| ||| || || || || || || || || || ||| | ||| || Sbjct 105700 GCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC--ACG 105643 Query 69205 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC--TATAACAAACA 69262 || || | || || | || || |||| || | | ||||| | | || Sbjct 105642 ACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACG 105583 Query 69263 TA--TTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA--- 69315 || || || || | ||| || | |||||||| || ||||| | || |||| Sbjct 105582 TAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAGG---TGCACAG 105526 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 |||| | ||||||||| || ||||| | ||| || || || || | ||||||| Sbjct 105525 TATTCAACTATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTA 105466 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 |||||| ||| || || |||||||| || || || || | || || || | || | Sbjct 105465 CTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCC 105406 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT 69495 |||| || || | ||||| | || || || ||||||| || ||| ||| | Sbjct 105405 TCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGAT---GGTCTTGCGACCCTTGCCTTCT 105349 Query 69496 ---TCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 || || || | || | |||| || ||||| || || |||||||| | | || | Sbjct 105348 GCCTCGTACTTCTCATAGAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCGG 105291 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 | || || || || ||||||| || ||| | ||| | || ||| || ||||| || | Sbjct 105290 GGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGA 105231 Query 69611 GATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 |||| |||||||| ||||| |||||||| | | | | ||| || ||||| | Sbjct 105230 GATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGT 105171 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 | ||| ||||| || ||||| | | ||||| |||||||| || || || ||||| | Sbjct 105170 TCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGA 105111 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || || |||||||| ||||| || | |||||||| ||||| || | |||| Sbjct 105110 AAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTC 105051 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 ||||| |||| |||||| || || || || ||||| |||| ||| ||| ||| | | Sbjct 105050 GGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGG 104991 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | || || | | | ||||| || ||||| || | || ||||| | |||||| Sbjct 104990 CACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGGCACAAG 104931 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 || | || || || || || || || || || || |||||| | | || || Sbjct 104930 TCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCATG 104871 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 ||| | ||| ||| || || || ||| | || ||||| ||||| || || Sbjct 104870 AAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAGT 104811 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTC 70090 | || || | | ||||||||| || ||||| || ||||| | ||||| | Sbjct 104810 ACTTGCTGGACATTAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATAC 104751 Query 70091 CTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | | || || | ||| | ||| || || || ||||| Sbjct 104750 CGACAGCCACTCTCATGATCATGTGTTGTGGACGTTC 104714 >seq85 Length=1171154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 ||||| |||||||| || ||| || || || ||||| || || | || |||| | Sbjct 1031659 TCTGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 1031718 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || |||||| | |||| ||| | || || || || ||||| ||| || || Sbjct 1031719 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 1031778 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || ||||| | || || | ||| ||| | |||||| | | | || |||||| Sbjct 1031779 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 1031838 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | || ||| || || | ||| | |||||| || ||||| || || ||||||||||| Sbjct 1031839 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 1031898 Query 40151 TTGTACATGTTCCATAT 40167 |||||||| | ||| || Sbjct 1031899 TTGTACATCTGCCAGAT 1031915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907391836960