Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq85 118 9e-22 seq145 95.1 1e-14 >seq85 Length=1171154 Score = 118 bits (130), Expect = 9e-22 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| ||||| || | ||||| |||| ||| | ||||| || || || || ||||| Sbjct 581306 TTATTGACCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 581247 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 |||||||| |||| | || || | ||| ||||| || |||| || | ||| || || Sbjct 581246 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTC 581187 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | |||||| ||||| ||||||| || | | | || | ||||| | | Sbjct 581186 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGA 581127 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||||| ||||| |||| || || |||| ||| || || ||||| |||||| Sbjct 581126 CTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 581072 >seq145 Length=311005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 316/484 (65%), Gaps = 11/484 (2%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 ||| || ||| |||| ||||| || | ||| || |||| ||||| |||||||| || Sbjct 105292 GGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAA 105233 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCC 131719 | ||| || | ||||| ||||| || ||||| | ||| ||| || || | || Sbjct 105232 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTC-CTCCTTT--CC 105176 Query 131720 ATAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778 | || ||| | | || || || || | || || ||||| || || | || | Sbjct 105175 GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 105116 Query 131779 TGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835 || | || || ||||||| || || || | ||||| | | |||||||| | Sbjct 105115 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 105056 Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA-GCTGC 131894 || || | ||| || | | |||||||| ||| || || |||| |||||| ||| | Sbjct 105055 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCT-C 104997 Query 131895 CATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTG 131954 || |||| | |||| |||| || || || || |||||||| | | || ||||| | | Sbjct 104996 CAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGG 104937 Query 131955 CGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAA 132014 | || | | ||||| | || || || || | |||||| | ||||||| || | Sbjct 104936 CACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 104877 Query 132015 AGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTG 132074 |||| || || | ||| || ||||||||| | ||| | || || ||||||| Sbjct 104876 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 104817 Query 132075 TAAA 132078 |||| Sbjct 104816 TAAA 104813 Score = 89.7 bits (98), Expect = 4e-13 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 130730 ACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTA 130789 |||||||| || | ||| | |||| || ||| || |||||||||| ||| |||| Sbjct 106161 ACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGG 106102 Query 130790 ACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTA 130849 ||| |||||| ||| | || || || | |||||| ||| | ||||| ||| Sbjct 106101 GAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTA 106042 Query 130850 GTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTT 130909 | || || ||||| || || | | | ||||||||||||||| | |||||| | Sbjct 106041 CTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGT 105982 Query 130910 CGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAAT 130969 ||||||| |||| ||||| ||| ||||||| | || ||||||||||| || Sbjct 105981 TGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAAC---CTTCCACATATCGTAT 105925 Query 130970 TGTAG 130974 || || Sbjct 105924 TGGAG 105920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933550662368