Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq85 118 9e-22
seq145 95.1 1e-14
>seq85
Length=1171154
Score = 118 bits (130), Expect = 9e-22
Identities = 168/235 (71%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073
|||||| ||||| || | ||||| |||| ||| | ||||| || || || || |||||
Sbjct 581306 TTATTGACCTCCACGAAGACGCAACACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 581247
Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133
|||||||| |||| | || || | ||| ||||| || |||| || | ||| || ||
Sbjct 581246 GTCGCTCAAAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTC 581187
Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193
|| || | |||||| ||||| ||||||| || | | | || | ||||| | |
Sbjct 581186 GGGTGGGATACCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGA 581127
Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||||||| ||||| |||| || || |||| ||| || || ||||| ||||||
Sbjct 581126 CTCAACTTCCAGAGTAATAGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 581072
>seq145
Length=311005
Score = 95.1 bits (104), Expect = 1e-14
Identities = 316/484 (65%), Gaps = 11/484 (2%)
Strand=Plus/Minus
Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661
||| || ||| |||| ||||| || | ||| || |||| ||||| |||||||| ||
Sbjct 105292 GGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAA 105233
Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT--TTCTCTTCTGTACCC 131719
| ||| || | ||||| ||||| || ||||| | ||| ||| || || | ||
Sbjct 105232 GAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTC-CTCCTTT--CC 105176
Query 131720 ATAAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACAC 131778
| || ||| | | || || || || | || || ||||| || || | || |
Sbjct 105175 GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 105116
Query 131779 TGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTA 131835
|| | || || ||||||| || || || | ||||| | | |||||||| |
Sbjct 105115 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 105056
Query 131836 TACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA-GCTGC 131894
|| || | ||| || | | |||||||| ||| || || |||| |||||| ||| |
Sbjct 105055 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCT-C 104997
Query 131895 CATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTG 131954
|| |||| | |||| |||| || || || || |||||||| | | || ||||| | |
Sbjct 104996 CAGTGGCACGGATTCTGTGGACATTCAGACCGATACCTCCAGCATTCTTGGAGATCATGG 104937
Query 131955 CGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAA 132014
| || | | ||||| | || || || || | |||||| | ||||||| || |
Sbjct 104936 CACAAGTCTTGAGAGTATCGTAAATCCCGTCGATACTGTCCTCCTTCATGTCGATCAAGA 104877
Query 132015 AGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTG 132074
|||| || || | ||| || ||||||||| | ||| | || || |||||||
Sbjct 104876 AGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTG 104817
Query 132075 TAAA 132078
||||
Sbjct 104816 TAAA 104813
Score = 89.7 bits (98), Expect = 4e-13
Identities = 167/245 (68%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 130730 ACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTA 130789
|||||||| || | ||| | |||| || ||| || |||||||||| ||| ||||
Sbjct 106161 ACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCAGCCAAGACACGTCGG 106102
Query 130790 ACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTA 130849
||| |||||| ||| | || || || | |||||| ||| | ||||| |||
Sbjct 106101 GAGTAGATGTTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTA 106042
Query 130850 GTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTT 130909
| || || ||||| || || | | | ||||||||||||||| | |||||| |
Sbjct 106041 CTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGT 105982
Query 130910 CGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAAT 130969
||||||| |||| ||||| ||| ||||||| | || ||||||||||| ||
Sbjct 105981 TGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAAC---CTTCCACATATCGTAT 105925
Query 130970 TGTAG 130974
|| ||
Sbjct 105924 TGGAG 105920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424933550662368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |