Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq145 248 1e-60
seq85 149 8e-31
seq59 82.4 9e-11
>seq145
Length=311005
Score = 248 bits (274), Expect = 1e-60
Identities = 1115/1745 (64%), Gaps = 45/1745 (3%)
Strand=Plus/Minus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|||||||||||||| || ||||| || ||| ||||||| || | ||||| |
Sbjct 106443 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 106384
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | |||||| | |||| || |||||| |||||| || |||||||||
Sbjct 106383 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 106324
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013
|| ||||| || ||||| | || | | | | || | || ||||| ||||||
Sbjct 106323 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 106267
Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073
|||| || ||| ||||| | || |||| || |||||||||||| || || |
Sbjct 106266 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 106207
Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133
|| || | | |||||| | | |||||||||||| || | ||||||| ||
Sbjct 106206 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAC 106147
Query 118134 AG---ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190
| | | ||| || || || ||||| || | | |||| ||||| |||
Sbjct 106146 AACCAAGGGTTA---ACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTG 106090
Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250
| ||||||||||| || ||||| ||| || | |||||| || ||| || |||
Sbjct 106089 GATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGC 106030
Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310
|| || || | ||| | |||||||| ||||| | | | | || ||| ||| | | |
Sbjct 106029 ATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTG 105970
Query 118311 TCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368
||||||| | || | | || | || | ||||||||| | ||||| ||||
Sbjct 105969 GCCCAGTCCCAAA-GATCGGTAGGTGTAACCTT-CCACATATCGTATTGGAGCTCTCCTT 105912
Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AG 118427
| || ||||| || || || ||||||| || | || | || || | || ||
Sbjct 105911 GTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAG 105852
Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487
| || ||| | ||||| || || || || || || | ||| | ||||||
Sbjct 105851 ATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCC 105793
Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATA--AATACATCCGCGAGACCTTGGACAC 118545
||| || || || | |||||| | | || || ||||| |||||||| |||||||
Sbjct 105792 TCGGGTGACTCGAATGGGAGTCG--AAGAGCTAGGAAGACATCGGCGAGACCCTGGACAC 105735
Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAA 118602
| | |||| || | || | | ||| ||| || || ||| || || ||
Sbjct 105734 CAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGT 105678
Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662
| || | ||||| | | | || | || || |||||||| || || |||||||
Sbjct 105677 AGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCT 105618
Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722
| | | || | |||| | | || ||||| || | || || || | || ||||
Sbjct 105617 TCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCA 105558
Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782
||||| |||| | ||| || || ||| || | || || ||||| | || |
Sbjct 105557 AGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGG 105498
Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 118842
| || ||||| || | |||||| ||||| |||| ||| || ||||||||||| |
Sbjct 105497 AGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGA 105438
Query 118843 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCA 118901
||||| | || | || ||||| ||||| | || ||| || | | ||| | | || |
Sbjct 105437 GCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGG 105378
Query 118902 GCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958
|| | ||| ||| | | || ||| |||||||||| ||||| || |||
Sbjct 105377 CCTTGA----TGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCA 105322
Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018
|| || ||||| | || | || || || || | ||||| | || | ||||
Sbjct 105321 AATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCAT 105262
Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078
|||| || |||||| |||||||||||||| ||||| ||||| || || ||||||||
Sbjct 105261 GTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGA 105202
Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138
|| ||| |||| |||| || | || || || || | || | || || | || |
Sbjct 105201 TCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACA 105142
Query 119139 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGG 119195
|| |||||||| || || ||||| | ||||| | || || | ||| |||||
Sbjct 105141 TCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGG 105082
Query 119196 TTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGG 119255
| ||||| || || ||| ||| || || || ||||| |||| ||||| | ||| |
Sbjct 105081 TCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTC 105022
Query 119256 CCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATA 119315
|| ||||| || ||| || | |||| | || ||||| | || ||| |||
Sbjct 105021 CCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATA 104962
Query 119316 CCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 119375
|| || || ||| ||||| || || | ||||| | |||| ||||| |||||
Sbjct 104961 CCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATA 104902
Query 119376 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGC 119434
||| |||| | |||| | |||||| || | ||| || || ||||| || ||
Sbjct 104901 CTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTG-TGCTTGTGGTGTGCCGGC 104843
Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTC 119492
| ||||| ||||| | |||||| || | | |||| |||||| | ||| |||
Sbjct 104842 GGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATTAAATTGTATGTC 104785
Query 119493 TCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTAT 119552
|| | | ||| || |||||||||||||||| | || | ||| | ||||| |
Sbjct 104784 TCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGT 104725
Query 119553 TGGGG 119557
|| ||
Sbjct 104724 TGTGG 104720
>seq85
Length=1171154
Score = 149 bits (164), Expect = 8e-31
Identities = 305/448 (68%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| | || ||||||||||||||||| ||||| ||| | | ||| ||||||||
Sbjct 1031024 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATG 1031083
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| || |||||||| || || || | | || | | | | ||| |||||
Sbjct 1031084 AAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 1031142
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||| | |||| |||||||||| | |||| | | |||||| |||| || |||
Sbjct 1031143 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 1031202
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| | | ||| || || ||||| || | | | | ||
Sbjct 1031203 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 1031262
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTCCT 130025
| | | | ||| || | || | ||| ||| | | || |||||| ||
Sbjct 1031263 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 1031321
Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085
||||||||| ||||||||||||||||| || || |||||| ||||||||||| ||||
Sbjct 1031322 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 1031381
Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145
| ||||||||||||||||| || | ||||| || ||||||||||| ||||| |||
Sbjct 1031382 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 1031441
Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAA 130173
|| || |||| |||||||| ||| ||
Sbjct 1031442 CGGCAAAGGCAACGAGACGCTGAGCGAA 1031469
>seq59
Length=800985
Score = 82.4 bits (90), Expect = 9e-11
Identities = 158/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACT 14293
|| |||| ||||| || ||||||||||| | ||||| || || | | || |
Sbjct 81985 TTCCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATA 81926
Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 14353
|| | ||| ||||| ||| ||||| ||||| |||||||||||||| || | ||
Sbjct 81925 GTGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAA 81866
Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413
||||| || ||| || || | ||||||||| ||| | || ||| || || ||
Sbjct 81865 CCGGAAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 81806
Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466
|| || || || || || | |||| ||||||||| || ||| | |||||
Sbjct 81805 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 81753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618433932207840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |