Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq145 248 1e-60 seq85 149 8e-31 seq59 82.4 9e-11 >seq145 Length=311005 Score = 248 bits (274), Expect = 1e-60 Identities = 1115/1745 (64%), Gaps = 45/1745 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| || ||||| || ||| ||||||| || | ||||| | Sbjct 106443 CGGAGGTAGTACATGCCGGTCTTCAGACCCAACTTCCAGCCAGCGAAGTGCATACTCGTG 106384 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | |||||| | |||| || |||||| |||||| || ||||||||| Sbjct 106383 ATCTTGCCCATAGTTGGATCCTTCATGTGGATGTTCATCGATTGGGACTGGTCGATGAAG 106324 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 || ||||| || ||||| | || | | | | || | || ||||| |||||| Sbjct 106323 GCACCACGATCAGCAGCCATCTGAACGA--TGGTACG-CTGGGAGATCTCCCAGACAGTC 106267 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || ||| ||||| | || |||| || |||||||||||| || || | Sbjct 106266 TTGTAAAGAGCCTTGATATCGGCAGGAATATTAGGGACATTTTGGATGGAACCTCCATCG 106207 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 || || | | |||||| | | |||||||||||| || | ||||||| || Sbjct 106206 GCGATGATACGGTTCTTCATGTTATCTGACCAGAGACCCATATCGACAAGATCCTTCAAC 106147 Query 118134 AG---ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | | | ||| || || || ||||| || | | |||| ||||| ||| Sbjct 106146 AACCAAGGGTTA---ACGACTTGGAATTCACCAGCCAAGACACGTCGGGAGTAGATGTTG 106090 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||||||||| || ||||| ||| || | |||||| || ||| || ||| Sbjct 106089 GATGTGTATGGCTCGAAACACTCGTTGAAGCCAAGGATTTGACTGGTACTGGCAGTTGGC 106030 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 || || || | ||| | |||||||| ||||| | | | | || ||| ||| | | | Sbjct 106029 ATAGGAGCAACGAGCAAACTGTTACGAAGACCGTGCTGCTTGATTTGTTGCTTCAAGGTG 105970 Query 118311 TCCCAGTCGTAGTTGAGCTTT--GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||||||| | || | | || | || | ||||||||| | ||||| |||| Sbjct 105969 GCCCAGTCCCAAA-GATCGGTAGGTGTAACCTT-CCACATATCGTATTGGAGCTCTCCTT 105912 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG-AG 118427 | || ||||| || || || ||||||| || | || | || || | || || Sbjct 105911 GTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGTACCATGCTGCTTTGCAAGCTCAACAG 105852 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 | || ||| | ||||| || || || || || || | ||| | |||||| Sbjct 105851 ATGAAGTCAAGG-CAGCGTGGTAGATGGTCTCGAAGATCTGGATATTGAGATGTTTGGCC 105793 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATA--AATACATCCGCGAGACCTTGGACAC 118545 ||| || || || | |||||| | | || || ||||| |||||||| ||||||| Sbjct 105792 TCGGGTGACTCGAATGGGAGTCG--AAGAGCTAGGAAGACATCGGCGAGACCCTGGACAC 105735 Query 118546 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAA 118602 | | |||| || | || | | ||| ||| || || ||| || || || Sbjct 105734 CAACAGCAATAGGTCTGTGACGGAAATTGCTCTTGCGTGC---CTCGGGAACAGGGTAGT 105678 Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662 | || | ||||| | | | || | || || |||||||| || || ||||||| Sbjct 105677 AGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGACAACCTGGCAGACATCGTGAAGCT 105618 Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCA 118722 | | | || | |||| | | || ||||| || | || || || | || |||| Sbjct 105617 TCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTAAGTTGGGAGAGCAAGAGAAGCCA 105558 Query 118723 GATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTG 118782 ||||| |||| | ||| || || ||| || | || || ||||| | || | Sbjct 105557 AGTTACAAACAGCGACCTCGTCAGGTGCACAGTATTCAACTATCTCTGTGCAGAGATTGG 105498 Query 118783 AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAA 118842 | || ||||| || | |||||| ||||| |||| ||| || ||||||||||| | Sbjct 105497 AGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCTTTCGGTTGCAAGCATCCTTGTAGA 105438 Query 118843 GCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCA 118901 ||||| | || | || ||||| ||||| | || ||| || | | ||| | | || | Sbjct 105437 GCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGG 105378 Query 118902 GCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958 || | ||| ||| | | || ||| |||||||||| ||||| || ||| Sbjct 105377 CCTTGA----TGGTCTTGCGACCCTTGCCTTCTGCCTCGTACTTCTCATAGAGAGCCTCA 105322 Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018 || || ||||| | || | || || || || | ||||| | || | |||| Sbjct 105321 AATTCGTCACCGTAAACATCAGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCAT 105262 Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078 |||| || |||||| |||||||||||||| ||||| ||||| || || |||||||| Sbjct 105261 GTACCATTCTTCTCAACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGA 105202 Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138 || ||| |||| |||| || | || || || || | || | || || | || | Sbjct 105201 TCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACA 105142 Query 119139 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGG 119195 || |||||||| || || ||||| | ||||| | || || | ||| ||||| Sbjct 105141 TCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGG 105082 Query 119196 TTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGG 119255 | ||||| || || ||| ||| || || || ||||| |||| ||||| | ||| | Sbjct 105081 TCAACATATCTGGCTGTGTTGTTGAAAACTCGGAGCATAGGAACAATACCGTTGGAGTTC 105022 Query 119256 CCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATA 119315 || ||||| || ||| || | |||| | || ||||| | || ||| ||| Sbjct 105021 CCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCACGGATTCTGTGGACATTCAGACCGATA 104962 Query 119316 CCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 119375 || || || ||| ||||| || || | ||||| | |||| ||||| ||||| Sbjct 104961 CCTCCAGCATTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCGTAAATCCCGTCGATA 104902 Query 119376 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGC 119434 ||| |||| | |||| | |||||| || | ||| || || ||||| || || Sbjct 104901 CTGTCCTCCTTCATGTCGATCAAGAAGCATGAAGAGAGTTG-TGCTTGTGGTGTGCCGGC 104843 Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTC 119492 | ||||| ||||| | |||||| || | | |||| |||||| | ||| ||| Sbjct 104842 GGCAAAGAGGGTTGGAGACGCGTG--TGTAAAGTACTTGCTGGACATTAAATTGTATGTC 104785 Query 119493 TCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTAT 119552 || | | ||| || |||||||||||||||| | || | ||| | ||||| | Sbjct 104784 TCGATAGCACTCTCAATATCATCCCCGTGAATACCGACAGCCACTCTCATGATCATGTGT 104725 Query 119553 TGGGG 119557 || || Sbjct 104724 TGTGG 104720 >seq85 Length=1171154 Score = 149 bits (164), Expect = 8e-31 Identities = 305/448 (68%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| | || ||||||||||||||||| ||||| ||| | | ||| |||||||| Sbjct 1031024 TAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATG 1031083 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || |||||||| || || || | | || | | | | ||| ||||| Sbjct 1031084 AAGTCGAATGGGTTGGCGGACTTGTAATACTTCTCGTTACCGAGAGCGAG-GAGCAGACG 1031142 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||| | |||| | | |||||| |||| || ||| Sbjct 1031143 ATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAGCGTTCATGCCGAGAAGAGCACA 1031202 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| | | ||| || || ||||| || | | | | || Sbjct 1031203 GGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAACAGCCTCGGTAATAACGTCTTG 1031262 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGA-GTTCCACGGCAAACTCCT 130025 | | | | ||| || | || | ||| ||| | | || |||||| || Sbjct 1031263 GACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGAACAAGAGGCA-GGCAAAGTCGG 1031321 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||||||||| ||||||||||||||||| || || |||||| ||||||||||| |||| Sbjct 1031322 TGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTAAGACCTGGCATCAGAC 1031381 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | ||||||||||||||||| || | ||||| || ||||||||||| ||||| ||| Sbjct 1031382 CACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGGAGAAGAAGATACCCTCAACAG 1031441 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAA 130173 || || |||| |||||||| ||| || Sbjct 1031442 CGGCAAAGGCAACGAGACGCTGAGCGAA 1031469 >seq59 Length=800985 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 14234 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACT 14293 || |||| ||||| || ||||||||||| | ||||| || || | | || | Sbjct 81985 TTCCCGATAGCGTCGATCTCATCGATGAAGATAATACAAGGCGTGTTCTTTCTTGCCATA 81926 Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 14353 || | ||| ||||| ||| ||||| ||||| |||||||||||||| || | || Sbjct 81925 GTGAATAAATCACGCACCCTCGAAGCACCTACACCAACAAACATCTCCACGAATTCGGAA 81866 Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 ||||| || ||| || || | ||||||||| ||| | || ||| || || || Sbjct 81865 CCGGAAACGCTGAAGAATGGTACTTGAGATTCACCAGCGGTAGCCTTGGCCAGAAGAGTT 81806 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || || || || | |||| ||||||||| || ||| | ||||| Sbjct 81805 TTACCTGTTCCAGGAGGACCAGAAAGAATGGCACCACGAGGAATCTTTGCACC 81753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433932207840