Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq145 361 6e-95 seq85 150 2e-31 >seq145 Length=311005 Score = 361 bits (400), Expect = 6e-95 Identities = 979/1467 (67%), Gaps = 47/1467 (3%) Strand=Plus/Plus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || ||||| |||| || ||||||| || | || |||| || ||||| || | ||| Sbjct 104654 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGG---CAAGAT 104709 Query 104215 GGA--AACC-CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 | ||| ||||| ||||| ||||| | ||||| |||||||||| ||||| || || Sbjct 104710 TGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATAT 104769 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329 ||| || | ||||||||| | |||||| |||| | | || ||||| | Sbjct 104770 TGAGAGTGCTATCGAGACATACAATTTAATGTCCAGCAAGTACTTTACA--CACGCGTCT 104827 Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||||||||| || || |||||| | | ||| | || |||||| | |||| | Sbjct 104828 CCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGAC 104887 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||| ||| |||| || || | ||||| | | ||||| ||||| Sbjct 104888 ATGAAGGAGGACAGTATCGACGGGATTTACGATACTCTCAAGACTTGTGCCATGATCTCC 104947 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 ||| ||||| ||||| || || | |||| | | |||| | | || ||| Sbjct 104948 AAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATT 105007 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| || | || | |||||| |||| ||||| || || || ||| |||| Sbjct 105008 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 105067 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || | ||||| | || | ||| | || || || |||| |||| || ||| Sbjct 105068 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 105127 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 ||||||||||| ||| || | ||||||||||| | || ||||| || | ||||| Sbjct 105128 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAA 105187 Query 104687 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | |||| | ||||||||||||| |||||| |||||||||||||||||||||||| | | Sbjct 105188 GTTCGCGCT--CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTG 105245 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 ||||| ||| ||| | ||| | || | || || || || || ||||| | |||| Sbjct 105246 TTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATG 105305 Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864 ||||| || ||||| || || || |||||||||| |||||| | | | | | Sbjct 105306 TTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGG-CAAGGGTC-G 105363 Query 104865 C--GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | ||| | | || | || | | ||| | | || ||| || | ||||||||||| | Sbjct 105364 CAAGACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 105422 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | || | |||||| ||||| || || || |||| |||||||||||| ||||| | | Sbjct 105423 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTG 105482 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 105039 || ||| || ||||||||||| ||||| || | ||| ||| | || || || Sbjct 105483 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAA--TACTGTGCACCTGACGA 105540 Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099 | ||||| |||||| | || || | |||||||| | || || | ||| | | | Sbjct 105541 GGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGAT 105598 Query 105100 GACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 | || | || | | | || || ||||| || | |||| || ||| | ||| Sbjct 105599 GGCAGCTACGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAAC 105658 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGA 105214 | | || || | || | ||||| ||| ||| || || || ||| | | Sbjct 105659 AAGATCATCGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGT 105715 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 ||| | || |||| | | ||||| ||||||||||| ||||| ||| | | ||| | | Sbjct 105716 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACTC 105775 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 |||| || || ||| || || | ||||| | || || |||||||| || ||| Sbjct 105776 CCATTCGAGTCACCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCAC 105835 Query 105335 GCCGCTCTTGAGGCGA---GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391 || || ||||| | ||| ||| | ||| || ||||| | || || || | Sbjct 105836 GCTGC-CTTGACTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACATAC 105892 Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451 || ||||| |||||||||||||| | ||| |||| ||||||| ||||||| | ||| | Sbjct 105893 GAAGGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTAC 105951 Query 105452 C-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 | || | ||||||| | | ||| ||| |||||| || | |||||||||||||| Sbjct 105952 CGATCTTTGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAG 106011 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 | | ||| | ||||| |||||||| ||| ||| |||||| | || || || || Sbjct 106012 TTTGCTCGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTG 106071 Query 105571 CTTTGAACCCTACACGACGAACATCTA 105597 || || || ||||| | |||||||| Sbjct 106072 TTTCGAGCCATACACATCCAACATCTA 106098 >seq85 Length=1171154 Score = 150 bits (166), Expect = 2e-31 Identities = 310/456 (68%), Gaps = 20/456 (4%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||| |||| ||| | || ||||| ||||||||||||||||||||| ||||| ||| Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | |||| | ||| | |||||||| ||||| ||||||||||| ||||||||||||| Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAATTATT 94976 || ||||| |||||||| || |||||| || ||||| || ||| ||| | Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC-------T 1031298 Query 94977 GCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGCCGTTG 95029 | || ||||| || | || | | || || | || ||| || || |||| Sbjct 1031297 CCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTG 1031238 Query 95030 AGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 95089 |||| ||| ||| ||| | ||||| ||||| || ||||| |||| ||||| ||| Sbjct 1031237 AGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTG 1031178 Query 95090 AAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 95149 ||| |||| ||||||| || ||||| | || | | || ||| Sbjct 1031177 CTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTCGGTAA 1031120 Query 95150 CTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGG 95207 | || || || ||| || ||||| ||||||||||||||||| || | ||| Sbjct 1031119 CGAGAAGTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGG 1031060 Query 95208 GAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 ||||| ||||||||||| ||| | || | ||||| Sbjct 1031059 AAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 1031024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259604315360