Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq145 361 6e-95
seq85 150 2e-31
>seq145
Length=311005
Score = 361 bits (400), Expect = 6e-95
Identities = 979/1467 (67%), Gaps = 47/1467 (3%)
Strand=Plus/Plus
Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214
|| ||||| |||| || ||||||| || | || |||| || ||||| || | |||
Sbjct 104654 TACTTTGGATTCAAGACTCTTGAGA-GATCATACCTTCTCCGTCTCGAGGG---CAAGAT 104709
Query 104215 GGA--AACC-CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271
| ||| ||||| ||||| ||||| | ||||| |||||||||| ||||| || ||
Sbjct 104710 TGCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTCGGTATTCACGGGGATGATAT 104769
Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACA 104329
||| || | ||||||||| | |||||| |||| | | || ||||| |
Sbjct 104770 TGAGAGTGCTATCGAGACATACAATTTAATGTCCAGCAAGTACTTTACA--CACGCGTCT 104827
Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389
||||||||||| || || |||||| | | ||| | || |||||| | |||| |
Sbjct 104828 CCAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGAC 104887
Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449
| ||||||||| ||| |||| || || | ||||| | | ||||| |||||
Sbjct 104888 ATGAAGGAGGACAGTATCGACGGGATTTACGATACTCTCAAGACTTGTGCCATGATCTCC 104947
Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509
||| ||||| ||||| || || | |||| | | |||| | | || |||
Sbjct 104948 AAGAATGCTGGAGGTATCGGTCTGAATGTCCACAGAATCCGTGCCACTGGAGCTTACATT 105007
Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569
|| ||||| || | || | |||||| |||| ||||| || || || ||| ||||
Sbjct 105008 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 105067
Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAG 104626
|| | ||||| | || | ||| | || || || |||| |||| || |||
Sbjct 105068 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 105127
Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686
||||||||||| ||| || | ||||||||||| | || ||||| || | |||||
Sbjct 105128 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAA 105187
Query 104687 G--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744
| |||| | ||||||||||||| |||||| |||||||||||||||||||||||| | |
Sbjct 105188 GTTCGCGCT--CGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTG 105245
Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804
||||| ||| ||| | ||| | || | || || || || || ||||| | ||||
Sbjct 105246 TTGAGAAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATG 105305
Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864
||||| || ||||| || || || |||||||||| |||||| | | | | |
Sbjct 105306 TTTACGGTGACGAATTTGAGGCTCTCTATGAGAAGTACGAGGCAGAAGG-CAAGGGTC-G 105363
Query 104865 C--GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921
| ||| | | || | || | | ||| | | || ||| || | ||||||||||| |
Sbjct 105364 CAAGACCAT-CAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCG 105422
Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981
| | || | |||||| ||||| || || || |||| |||||||||||| ||||| | |
Sbjct 105423 GAAACCCTTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGTAATCAGAAGAACCTTG 105482
Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGA 105039
|| ||| || ||||||||||| ||||| || | ||| ||| | || || ||
Sbjct 105483 GTACCATCCGCAGCTCCAATCTCTGCACAGAGATAGTTGAA--TACTGTGCACCTGACGA 105540
Query 105040 GACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAA 105099
| ||||| |||||| | || || | |||||||| | || || | ||| | | |
Sbjct 105541 GGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGT-CAACCA-AAATGAT 105598
Query 105100 GACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157
| || | || | | | || || ||||| || | |||| || ||| | |||
Sbjct 105599 GGCAGCTACGACTTTCAGAAGCTTCACGATGTCTGCCAGGTTGTCGTGAAGAACTTGAAC 105658
Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAATATGAGA 105214
| | || || | || | ||||| ||| ||| || || || ||| | |
Sbjct 105659 AAGATCATCGACATCAACTACTACCCTGTTCCCGAG---GCACGCAAGAGCAATTTCCGT 105715
Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274
||| | || |||| | | ||||| ||||||||||| ||||| ||| | | ||| | |
Sbjct 105716 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTCTTCCTAGCTCTTCGACTC 105775
Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334
|||| || || ||| || || | ||||| | || || |||||||| || |||
Sbjct 105776 CCATTCGAGTCACCCGAGGCCAAACATCTCAATATCCAGATCTTCGAGACCATCTACCAC 105835
Query 105335 GCCGCTCTTGAGGCGA---GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391
|| || ||||| | ||| ||| | ||| || ||||| | || || || |
Sbjct 105836 GCTGC-CTTGACTTCATCTGTT--GAGCTTGCAAAGCAGCATGGTACTTACGAGACATAC 105892
Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451
|| ||||| |||||||||||||| | ||| |||| ||||||| ||||||| | ||| |
Sbjct 105893 GAAGGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGT-GGAAGGTTACACCTAC 105951
Query 105452 C-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510
| || | ||||||| | | ||| ||| |||||| || | ||||||||||||||
Sbjct 105952 CGATCTTTGGGACTGGGCCACCTTGAAGCAACAAATCAAGCAGCACGGTCTTCGTAACAG 106011
Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570
| | ||| | ||||| |||||||| ||| ||| |||||| | || || || ||
Sbjct 106012 TTTGCTCGTTGCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTG 106071
Query 105571 CTTTGAACCCTACACGACGAACATCTA 105597
|| || || ||||| | ||||||||
Sbjct 106072 TTTCGAGCCATACACATCCAACATCTA 106098
>seq85
Length=1171154
Score = 150 bits (166), Expect = 2e-31
Identities = 310/456 (68%), Gaps = 20/456 (4%)
Strand=Plus/Minus
Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857
|| ||| |||| ||| | || ||||| ||||||||||||||||||||| ||||| |||
Sbjct 1031469 TTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTC 1031410
Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917
| |||| | ||| | |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1031409 GCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAG 1031350
Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCAAATTATT 94976
|| ||||| |||||||| || |||||| || ||||| || ||| ||| |
Sbjct 1031349 CTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC-CTGCCTCTTGTTC-------T 1031298
Query 94977 GCGTATTAAACCAACGACTGAG--ACTATTCATTCTA-----TTGTTAAGGAAGCCGTTG 95029
| || ||||| || | || | | || || | || ||| || || ||||
Sbjct 1031297 CCCACTTGAACCATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTG 1031238
Query 95030 AGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 95089
|||| ||| ||| ||| | ||||| ||||| || ||||| |||| ||||| |||
Sbjct 1031237 AGATCGAGCAAGAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTG 1031178
Query 95090 AAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 95149
||| |||| ||||||| || ||||| | || | | || |||
Sbjct 1031177 CTTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCT--CCTCGCTCTCGGTAA 1031120
Query 95150 CTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGG 95207
| || || || ||| || ||||| ||||||||||||||||| || | |||
Sbjct 1031119 CGAGAAGTATTACAAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCGG 1031060
Query 95208 GAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243
||||| ||||||||||| ||| | || | |||||
Sbjct 1031059 AAAGACCAACTTCTTCGAGAAGCGTGTCGCCGACTA 1031024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583259604315360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |