Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10- 26] 164 sequences; 55,639,110 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq159 242 1e-58 seq85 192 2e-43 seq58 129 2e-24 seq56 114 4e-20 seq95 107 6e-18 seq105 89.7 2e-12 >seq159 Length=1199673 Score = 242 bits (268), Expect = 1e-58 Identities = 504/743 (68%), Gaps = 17/743 (2%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 |||||||||||| | ||||| || || ||||| || | | | | | |||||||| | Sbjct 167833 ATAGGAATCGATCTGGGTACCACCTACTCTTGCGTGGGTATCTTCAGAGATGATCGTATC 167774 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| || ||||| || || || ||| | ||||| || || | ||| || || || || Sbjct 167773 GAAATCATCGCAAACGACCAGGGAAACCGCACAACACCTTCCTTCGTCGCCTTCACAGAT 167714 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 ||||||||| |||| || ||| |||| || || |||| ||| || |||| || || Sbjct 167713 ACTGAGCGTTTGATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCAATCAACACT 167654 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || ||||| ||||| || ||||| | |||| | |||| || || Sbjct 167653 GTCTTCGATGCCAAGCGTCTGATTGGACGCAAGTACGCAGATGCTGAGG--TC----CAG 167600 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 ||||| | || || || || || |||||| | | | | |||| || ||| | | Sbjct 167599 GCTGATATGAAGCACTTCCCCTTCACTGTTCT--CGACCGT-GGTGGAAAGCCAGTCGTC 167543 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || || || | || ||||| ||| || || || || || ||| | Sbjct 167542 GAGGTTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCTGAGGAGATCTCTTCCATGATC 167483 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 || || || |||| || | |||||| || || | || | ||| || | | || || Sbjct 167482 TTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGAGGAACTGTCAACAACGCCGTC 167423 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 ||||||||||||| || || | ||| |||||||| || ||||| ||||| || Sbjct 167422 GTTACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCCACAAAGGATGCCGGTCTG 167363 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | |||||||| |||| || || || || ||||| || || ||||| || Sbjct 167362 ATCGCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCCTAC 167303 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| |||| | ||| || ||| | || || || ||| | ||||| || Sbjct 167302 GGTCTTGACAAAAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGGAGGA 167243 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||| ||||| || || | || | || ||||| || ||||| || || | || || Sbjct 167242 ACTTTCGATGTCTCTCTTTTGACTATCGAGGAGGGTATCTTTGAGGTCAAGTCTACCGCC 167183 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| || || || || |||||||| ||| || || || | Sbjct 167182 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAATCGTCTTGTTAACCACTTCGTAAGT 167123 Query 349916 GAATTTAAGCGTCAAGC-TAAAA 349937 || ||||| || ||||| ||||| Sbjct 167122 GAGTTTAAACG-CAAGCATAAAA 167101 >seq85 Length=1171154 Score = 192 bits (212), Expect = 2e-43 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| ||||||||||||||||| || || || |||||||| Sbjct 581075 CATACCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATC 581016 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| || || || ||||| |||||||| |||||||| || || || | ||||| || || Sbjct 581015 AGACAAGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 580956 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || |||||||| | |||||||| ||| Sbjct 580955 TGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTC 580896 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || ||||| | |||||||||||| || || || || ||||||||||| Sbjct 580895 GACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 580845 Score = 129 bits (142), Expect = 2e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| || || || || ||||| Sbjct 580847 CATACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATC 580788 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || |||||||| ||||| ||||| || ||||| | |||||||||||| || Sbjct 580787 GGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGG 580728 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || || || || || | || ||||| || || | ||| |||| ||| Sbjct 580727 AGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTC 580668 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || | ||||| || || || || || || Sbjct 580667 GACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 580629 Score = 111 bits (122), Expect = 5e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || ||||| ||||||||||| || || || || || || || || || ||||| || Sbjct 581281 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCC 581222 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648 | || || |||||||| ||||| | ||||| || || || || || || |||||||| Sbjct 581221 AACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGG 581162 Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 || || | || || || || || | ||||| | |||||||| || |||| |||||| Sbjct 581161 ATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTT 581102 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || || || || |||||||| Sbjct 581101 CCAGTCAAAGTCTTGACGAAGATCTGCAT 581073 Score = 100 bits (110), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || |||||||||||||| || || || || || | Sbjct 580559 TTTGCATACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGT 580500 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || || || || || || || ||||| ||||| | ||| ||||| | Sbjct 580499 AATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGT 580440 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | || ||||| || || || || || || || ||| || ||||| || || | || || Sbjct 580439 CGGGGGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATAGTGTCCGAA 580381 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || || || || || | ||||| ||||| Sbjct 580380 GACTCGACCTCGAGAGTGATGGTCTTGCCGGT 580349 >seq58 Length=1028984 Score = 129 bits (142), Expect = 2e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| || || || || | ||||| ||||| || || || |||||||| ||||| Sbjct 907500 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 907441 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | ||||||||| || || || ||||| || || ||||| || || | || ||||| ||| Sbjct 907440 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 907381 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 |||| ||| || | || || || || |||| |||||||||||| || ||||| || || Sbjct 907380 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 907322 >seq56 Length=522306 Score = 114 bits (126), Expect = 4e-20 Identities = 177/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 378194 CCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTT 378253 |||| | |||||| | || || | ||| || || || || ||||| | | ||| | Sbjct 353971 CCATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCT 353912 Query 378254 TAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAG 378313 |||| |||||||| || ||||| | |||||| |||| ||||||||||| || || |||| Sbjct 353911 TAACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAG 353852 Query 378314 GAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCAT 378373 | || || || | || | | || |||||| ||||| | | |||| || | ||||| Sbjct 353851 GTGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCAT 353792 Query 378374 ATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAA 378433 ||| || |||| ||||| || || | || || || | ||||| || ||||| || | Sbjct 353791 CTTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGA 353732 Query 378434 CATTCTGTTGACC 378446 || || ||||| Sbjct 353731 CAGATTGCTGACC 353719 >seq95 Length=967449 Score = 107 bits (118), Expect = 6e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || ||||||||||| ||||| || || || || || || || Sbjct 168573 ACCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 168632 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 168633 GAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGG 168692 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || || || | ||| || | || || Sbjct 168693 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTAC 168752 Query 140690 TTCAAGTGTAACTGTCTTTCCGGT 140713 || || |||| |||||| || || Sbjct 168753 CTCTAGGGTAATTGTCTTGCCCGT 168776 >seq105 Length=2038561 Score = 89.7 bits (98), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260 ||| || || ||||| || || || || |||||||| | ||| |||||| | || Sbjct 1647128 TATCGGTATTGATTTGGGCACCACCTACTCTTGTGTGGGTGTGATGCAAAAGGGCAAAGT 1647069 Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320 ||||| | | || |||||||| |||||| || || |||||||| ||||||||||| Sbjct 1647068 CGAAATCCTCGTCAACGATCAAGGGCACAGAATTACACCCTCATACGTAGCATTTACCGA 1647009 Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAA 349374 |||||| || |||| || | ||||| || || || || || || ||||| Sbjct 1647008 TGATGAGCGATTGGTTGGAGACGCCGCAAAGAACCAGGCCGCCGCGAACCCAAA 1646955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251216071692