Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20commune_20[genbank_20GCA_5F900074885.1_202016-10-
26] 164 sequences; 55,639,110 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq159 242 1e-58
seq85 192 2e-43
seq58 129 2e-24
seq56 114 4e-20
seq95 107 6e-18
seq105 89.7 2e-12
>seq159
Length=1199673
Score = 242 bits (268), Expect = 1e-58
Identities = 504/743 (68%), Gaps = 17/743 (2%)
Strand=Plus/Minus
Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261
|||||||||||| | ||||| || || ||||| || | | | | | |||||||| |
Sbjct 167833 ATAGGAATCGATCTGGGTACCACCTACTCTTGCGTGGGTATCTTCAGAGATGATCGTATC 167774
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
||||| || ||||| || || || ||| | ||||| || || | ||| || || || ||
Sbjct 167773 GAAATCATCGCAAACGACCAGGGAAACCGCACAACACCTTCCTTCGTCGCCTTCACAGAT 167714
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
||||||||| |||| || ||| |||| || || |||| ||| || |||| || ||
Sbjct 167713 ACTGAGCGTTTGATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCAATCAACACT 167654
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || ||||| ||||| || ||||| | |||| | |||| || ||
Sbjct 167653 GTCTTCGATGCCAAGCGTCTGATTGGACGCAAGTACGCAGATGCTGAGG--TC----CAG 167600
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
||||| | || || || || || |||||| | | | | |||| || ||| | |
Sbjct 167599 GCTGATATGAAGCACTTCCCCTTCACTGTTCT--CGACCGT-GGTGGAAAGCCAGTCGTC 167543
Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
|||||||| | || || || | || ||||| ||| || || || || || ||| |
Sbjct 167542 GAGGTTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCTGAGGAGATCTCTTCCATGATC 167483
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
|| || || |||| || | |||||| || || | || | ||| || | | || ||
Sbjct 167482 TTGGTCAAGATGAGAGAGACTGCTGAGGCTTACCTCGGAGGAACTGTCAACAACGCCGTC 167423
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
||||||||||||| || || | ||| |||||||| || ||||| ||||| ||
Sbjct 167422 GTTACTGTACCAGCTTACTTCACTGACTCCCAGCGTCAAGCCACAAAGGATGCCGGTCTG 167363
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
|| || || | |||||||| |||| || || || || ||||| || || ||||| ||
Sbjct 167362 ATCGCCGGTCTCAATGTTCTCCGAATCATCAACGAGCCAACTGCCGCTGCCATTGCCTAC 167303
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| ||||| |||| | ||| || ||| | || || || ||| | ||||| ||
Sbjct 167302 GGTCTTGACAAAAAGGTTGAGGGTGAGCGTAATGTCCTCATCTTCGATCTTGGTGGAGGA 167243
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
||||| ||||| || || | || | || ||||| || ||||| || || | || ||
Sbjct 167242 ACTTTCGATGTCTCTCTTTTGACTATCGAGGAGGGTATCTTTGAGGTCAAGTCTACCGCC 167183
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || || | ||||| || || || || |||||||| ||| || || || |
Sbjct 167182 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAATCGTCTTGTTAACCACTTCGTAAGT 167123
Query 349916 GAATTTAAGCGTCAAGC-TAAAA 349937
|| ||||| || ||||| |||||
Sbjct 167122 GAGTTTAAACG-CAAGCATAAAA 167101
>seq85
Length=1171154
Score = 192 bits (212), Expect = 2e-43
Identities = 181/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| ||||||||||||||||| || || || ||||||||
Sbjct 581075 CATACCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATC 581016
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| || || || ||||| |||||||| |||||||| || || || | ||||| || ||
Sbjct 581015 AGACAAGGTACGGCCATCCTCAAGTTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGG 580956
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || |||||||| | |||||||| |||
Sbjct 580955 TGGGATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTC 580896
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || ||||| | |||||||||||| || || || || |||||||||||
Sbjct 580895 GACCTCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 580845
Score = 129 bits (142), Expect = 2e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || ||||| ||||| || || || || |||||
Sbjct 580847 CATACCACCACGGAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATC 580788
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || |||||||| ||||| ||||| || ||||| | |||||||||||| ||
Sbjct 580787 GGACAGGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGCTGATCGGG 580728
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || || || || || | || ||||| || || | ||| |||| |||
Sbjct 580727 AGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTC 580668
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| || || | ||||| || || || || || ||
Sbjct 580667 GACTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGAC 580629
Score = 111 bits (122), Expect = 5e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588
|| ||||| ||||||||||| || || || || || || || || || ||||| ||
Sbjct 581281 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCCTCC 581222
Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGA 140648
| || || |||||||| ||||| | ||||| || || || || || || ||||||||
Sbjct 581221 AACTGCTTACCAGCAAAAATTAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGG 581162
Query 140649 ATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708
|| || | || || || || || | ||||| | |||||||| || |||| ||||||
Sbjct 581161 ATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTCTTT 581102
Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || | || || || || ||||||||
Sbjct 581101 CCAGTCAAAGTCTTGACGAAGATCTGCAT 581073
Score = 100 bits (110), Expect = 9e-16
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| ||||| | | || || |||||||||||||| || || || || || |
Sbjct 580559 TTTGCATACCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGT 580500
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || || || || || || || ||||| ||||| | ||| ||||| |
Sbjct 580499 AATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGT 580440
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
| || ||||| || || || || || || || ||| || ||||| || || | || ||
Sbjct 580439 CGGGGGGAATGCCCTCCTTGTCTTGGATCTT-GCTCTTGACATTGTCGATAGTGTCCGAA 580381
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
| || || || || || | ||||| |||||
Sbjct 580380 GACTCGACCTCGAGAGTGATGGTCTTGCCGGT 580349
>seq58
Length=1028984
Score = 129 bits (142), Expect = 2e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|||||||| || || || || | ||||| ||||| || || || |||||||| |||||
Sbjct 907500 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 907441
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
| ||||||||| || || || ||||| || || ||||| || || | || ||||| |||
Sbjct 907440 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 907381
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728
|||| ||| || | || || || || |||| |||||||||||| || ||||| || ||
Sbjct 907380 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 907322
>seq56
Length=522306
Score = 114 bits (126), Expect = 4e-20
Identities = 177/253 (70%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 378194 CCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTT 378253
|||| | |||||| | || || | ||| || || || || ||||| | | ||| |
Sbjct 353971 CCATAACATCTTCCAGAGCCTTGACAAGACGACGTTGGATGTATCCAGTCTCAGCAGTCT 353912
Query 378254 TAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAG 378313
|||| |||||||| || ||||| | |||||| |||| ||||||||||| || || ||||
Sbjct 353911 TAACAGCAGTATCGATCAAACCTTCTCGACCAGCCATAGCATGGAAGAAGAACTCGGTAG 353852
Query 378314 GAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCAT 378373
| || || || | || | | || |||||| ||||| | | |||| || | |||||
Sbjct 353851 GTGTGAGACCTCGAAGATACGAGTTCTCAACGAATCCACGCGATTCTGGGGAGTAATCAT 353792
Query 378374 ATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAA 378433
||| || |||| ||||| || || | || || || | ||||| || ||||| || |
Sbjct 353791 CTTTGGTGAAATGCGGTAAGGTTCGGTACTTGAAGCCGAAAGGAATACGCTTTCCTTCGA 353732
Query 378434 CATTCTGTTGACC 378446
|| || |||||
Sbjct 353731 CAGATTGCTGACC 353719
>seq95
Length=967449
Score = 107 bits (118), Expect = 6e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||| ||||| | | || || ||||||||||| ||||| || || || || || || ||
Sbjct 168573 ACCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGA 168632
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || |||||||| ||||| || || || ||||| || ||||| || || || ||
Sbjct 168633 GAGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGG 168692
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || || ||||| || || | || || || || || | ||| || | || ||
Sbjct 168693 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCGGAAGACTCTAC 168752
Query 140690 TTCAAGTGTAACTGTCTTTCCGGT 140713
|| || |||| |||||| || ||
Sbjct 168753 CTCTAGGGTAATTGTCTTGCCCGT 168776
>seq105
Length=2038561
Score = 89.7 bits (98), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 349201 TATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGT 349260
||| || || ||||| || || || || |||||||| | ||| |||||| | ||
Sbjct 1647128 TATCGGTATTGATTTGGGCACCACCTACTCTTGTGTGGGTGTGATGCAAAAGGGCAAAGT 1647069
Query 349261 AGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGA 349320
||||| | | || |||||||| |||||| || || |||||||| |||||||||||
Sbjct 1647068 CGAAATCCTCGTCAACGATCAAGGGCACAGAATTACACCCTCATACGTAGCATTTACCGA 1647009
Query 349321 AACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAA 349374
|||||| || |||| || | ||||| || || || || || || |||||
Sbjct 1647008 TGATGAGCGATTGGTTGGAGACGCCGCAAAGAACCAGGCCGCCGCGAACCCAAA 1646955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515251216071692
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |